# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm04669.fasta.nr -Q bm04669.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm04669, 213 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6815598 sequences Expectation_n fit: rho(ln(x))= 4.9385+/-0.000182; mu= 9.6017+/- 0.010 mean_var=68.3604+/-13.735, 0's: 53 Z-trim: 131 B-trim: 2245 in 1/66 Lambda= 0.155121 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|51316981|sp|P84079|ARF1_RAT ADP-ribosylation fa ( 181) 1194 275.4 3.3e-72 gi|1703377|sp|P51643|ARF1_XENLA ADP-ribosylation f ( 181) 1191 274.7 5.3e-72 gi|74214661|dbj|BAE31170.1| unnamed protein produc ( 181) 1189 274.3 7.2e-72 gi|74223608|dbj|BAE28685.1| unnamed protein produc ( 181) 1188 274.0 8.4e-72 gi|74207616|dbj|BAE40054.1| unnamed protein produc ( 181) 1188 274.0 8.4e-72 gi|1065361|pdb|1HUR|A Chain A, Human Adp-Ribosylat ( 180) 1187 273.8 9.8e-72 gi|38174142|gb|AAH61435.1| Hypothetical protein MG ( 181) 1187 273.8 9.9e-72 gi|27503439|gb|AAH42337.1| Arf2-prov protein [Xeno ( 181) 1182 272.7 2.1e-71 gi|119889252|ref|XP_001253266.1| PREDICTED: simila ( 181) 1181 272.5 2.5e-71 gi|53127520|emb|CAG31143.1| hypothetical protein [ ( 181) 1177 271.6 4.6e-71 gi|28279265|gb|AAH46063.1| ADP-ribosylation factor ( 181) 1177 271.6 4.6e-71 gi|114153122|gb|ABI52727.1| ADP ribosylation facto ( 181) 1165 268.9 3e-70 gi|27881968|gb|AAH44531.1| ADP-ribosylation factor ( 180) 1160 267.8 6.5e-70 gi|47117660|sp|P61209|ARF1_DROME ADP-ribosylation ( 182) 1158 267.3 8.9e-70 gi|42794005|gb|AAH66632.1| ADP-ribosylation factor ( 181) 1156 266.9 1.2e-69 gi|50417468|gb|AAH77319.1| MGC80261 protein [Xenop ( 181) 1154 266.4 1.6e-69 gi|68565018|sp|Q5R5P7.3|ARF3_PONAB ADP-ribosylatio ( 181) 1153 266.2 1.9e-69 gi|67084111|gb|AAY66990.1| ADP-ribosylation factor ( 181) 1153 266.2 1.9e-69 gi|30585213|gb|AAP36879.1| Homo sapiens ADP-ribosy ( 182) 1153 266.2 1.9e-69 gi|50369266|gb|AAH75924.1| ADP-ribosylation factor ( 181) 1152 266.0 2.2e-69 gi|87248075|gb|ABD36090.1| ADP-ribosylation factor ( 182) 1152 266.0 2.3e-69 gi|149054474|gb|EDM06291.1| ADP-ribosylation facto ( 255) 1153 266.3 2.5e-69 gi|190692109|gb|ACE87829.1| ADP-ribosylation facto ( 181) 1150 265.5 3.1e-69 gi|91090754|ref|XP_968387.1| PREDICTED: similar to ( 182) 1150 265.5 3.1e-69 gi|29791979|gb|AAH50487.1| ADP-ribosylation factor ( 181) 1149 265.3 3.6e-69 gi|66549728|ref|XP_392990.2| PREDICTED: similar to ( 182) 1149 265.3 3.6e-69 gi|51316982|sp|P84082|ARF2_RAT ADP-ribosylation fa ( 181) 1146 264.6 5.7e-69 gi|56684613|gb|AAW21993.1| ADP ribosylation factor ( 182) 1142 263.7 1.1e-68 gi|57092925|ref|XP_531820.1| PREDICTED: similar to ( 181) 1141 263.5 1.2e-68 gi|57091007|ref|XP_537606.1| PREDICTED: similar to ( 181) 1139 263.1 1.7e-68 gi|109018297|ref|XP_001105536.1| PREDICTED: simila ( 181) 1138 262.8 2e-68 gi|74907434|sp|Q61LA8|ARF12_CAEBR ADP-ribosylation ( 181) 1136 262.4 2.7e-68 gi|26327163|dbj|BAC27325.1| unnamed protein produc ( 181) 1136 262.4 2.7e-68 gi|190586734|gb|EDV26787.1| ADP-ribosylation facto ( 181) 1133 261.7 4.3e-68 gi|1703373|sp|Q10943|ARF12_CAEEL ADP-ribosylation ( 181) 1133 261.7 4.3e-68 gi|47229577|emb|CAG06773.1| unnamed protein produc ( 187) 1131 261.3 6e-68 gi|14714692|gb|AAH10487.1| ADP-ribosylation factor ( 181) 1130 261.1 6.8e-68 gi|55824592|gb|AAV66416.1| ADP-ribosylation factor ( 171) 1128 260.6 8.9e-68 gi|126322280|ref|XP_001370319.1| PREDICTED: simila ( 181) 1124 259.7 1.7e-67 gi|47220340|emb|CAF98439.1| unnamed protein produc ( 181) 1123 259.5 2e-67 gi|73996599|ref|XP_862902.1| PREDICTED: similar to ( 187) 1123 259.5 2.1e-67 gi|193709134|ref|XP_001944342.1| PREDICTED: simila ( 182) 1118 258.4 4.4e-67 gi|73965150|ref|XP_860566.1| PREDICTED: similar to ( 187) 1117 258.2 5.3e-67 gi|47218806|emb|CAG02791.1| unnamed protein produc ( 180) 1116 257.9 6e-67 gi|156221300|gb|EDO42156.1| predicted protein [Nem ( 181) 1114 257.5 8.2e-67 gi|109084014|ref|XP_001106772.1| PREDICTED: simila ( 181) 1113 257.3 9.5e-67 gi|73970057|ref|XP_854343.1| PREDICTED: similar to ( 215) 1109 256.4 2e-66 gi|32401087|gb|AAP80740.1| ADP-ribosylation factor ( 181) 1107 255.9 2.4e-66 gi|89258459|gb|ABD65453.1| Arf1 [Suberites domuncu ( 181) 1104 255.2 3.8e-66 gi|1703376|sp|P51824|ARF1_SOLTU ADP-ribosylation f ( 197) 1101 254.6 6.5e-66 >>gi|51316981|sp|P84079|ARF1_RAT ADP-ribosylation factor (181 aa) initn: 1194 init1: 1194 opt: 1194 Z-score: 1451.5 bits: 275.4 E(): 3.3e-72 Smith-Waterman score: 1194; 100.000% identity (100.000% similar) in 181 aa overlap (33-213:1-181) 10 20 30 40 50 60 bm0466 RHLVGAKPTPGSEQQPLRCPWPVSFHLSTSMGNIFANLFKGLFGKKEMRILMVGLDAAGK :::::::::::::::::::::::::::::: gi|513 MGNIFANLFKGLFGKKEMRILMVGLDAAGK 10 20 30 70 80 90 100 110 120 bm0466 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|513 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 40 50 60 70 80 90 130 140 150 160 170 180 bm0466 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|513 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 100 110 120 130 140 150 190 200 210 bm0466 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK ::::::::::::::::::::::::::::::: gi|513 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK 160 170 180 >>gi|1703377|sp|P51643|ARF1_XENLA ADP-ribosylation facto (181 aa) initn: 1191 init1: 1191 opt: 1191 Z-score: 1447.8 bits: 274.7 E(): 5.3e-72 Smith-Waterman score: 1191; 99.448% identity (100.000% similar) in 181 aa overlap (33-213:1-181) 10 20 30 40 50 60 bm0466 RHLVGAKPTPGSEQQPLRCPWPVSFHLSTSMGNIFANLFKGLFGKKEMRILMVGLDAAGK :::.:::::::::::::::::::::::::: gi|170 MGNMFANLFKGLFGKKEMRILMVGLDAAGK 10 20 30 70 80 90 100 110 120 bm0466 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 40 50 60 70 80 90 130 140 150 160 170 180 bm0466 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 100 110 120 130 140 150 190 200 210 bm0466 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK ::::::::::::::::::::::::::::::: gi|170 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK 160 170 180 >>gi|74214661|dbj|BAE31170.1| unnamed protein product [M (181 aa) initn: 1189 init1: 1189 opt: 1189 Z-score: 1445.4 bits: 274.3 E(): 7.2e-72 Smith-Waterman score: 1189; 99.448% identity (100.000% similar) in 181 aa overlap (33-213:1-181) 10 20 30 40 50 60 bm0466 RHLVGAKPTPGSEQQPLRCPWPVSFHLSTSMGNIFANLFKGLFGKKEMRILMVGLDAAGK :::::::::::::::::::::::::::::: gi|742 MGNIFANLFKGLFGKKEMRILMVGLDAAGK 10 20 30 70 80 90 100 110 120 bm0466 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 40 50 60 70 80 90 130 140 150 160 170 180 bm0466 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 100 110 120 130 140 150 190 200 210 bm0466 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK :::::::::::::::::.::::::::::::: gi|742 RNWYIQATCATSGDGLYKGLDWLSNQLRNQK 160 170 180 >>gi|74223608|dbj|BAE28685.1| unnamed protein product [M (181 aa) initn: 1188 init1: 1188 opt: 1188 Z-score: 1444.2 bits: 274.0 E(): 8.4e-72 Smith-Waterman score: 1188; 99.448% identity (99.448% similar) in 181 aa overlap (33-213:1-181) 10 20 30 40 50 60 bm0466 RHLVGAKPTPGSEQQPLRCPWPVSFHLSTSMGNIFANLFKGLFGKKEMRILMVGLDAAGK :::::::::::::::::::::::::::::: gi|742 MGNIFANLFKGLFGKKEMRILMVGLDAAGK 10 20 30 70 80 90 100 110 120 bm0466 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 40 50 60 70 80 90 130 140 150 160 170 180 bm0466 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 100 110 120 130 140 150 190 200 210 bm0466 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK ::::::::::::::::::::::: ::::::: gi|742 RNWYIQATCATSGDGLYEGLDWLCNQLRNQK 160 170 180 >>gi|74207616|dbj|BAE40054.1| unnamed protein product [M (181 aa) initn: 1188 init1: 1188 opt: 1188 Z-score: 1444.2 bits: 274.0 E(): 8.4e-72 Smith-Waterman score: 1188; 99.448% identity (100.000% similar) in 181 aa overlap (33-213:1-181) 10 20 30 40 50 60 bm0466 RHLVGAKPTPGSEQQPLRCPWPVSFHLSTSMGNIFANLFKGLFGKKEMRILMVGLDAAGK :::::::::::::::::::::::::::::: gi|742 MGNIFANLFKGLFGKKEMRILMVGLDAAGK 10 20 30 70 80 90 100 110 120 bm0466 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 40 50 60 70 80 90 130 140 150 160 170 180 bm0466 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 100 110 120 130 140 150 190 200 210 bm0466 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK :::::::::::::::::::::::::::::.: gi|742 RNWYIQATCATSGDGLYEGLDWLSNQLRNRK 160 170 180 >>gi|1065361|pdb|1HUR|A Chain A, Human Adp-Ribosylation (180 aa) initn: 1187 init1: 1187 opt: 1187 Z-score: 1443.0 bits: 273.8 E(): 9.8e-72 Smith-Waterman score: 1187; 100.000% identity (100.000% similar) in 180 aa overlap (34-213:1-180) 10 20 30 40 50 60 bm0466 HLVGAKPTPGSEQQPLRCPWPVSFHLSTSMGNIFANLFKGLFGKKEMRILMVGLDAAGKT :::::::::::::::::::::::::::::: gi|106 GNIFANLFKGLFGKKEMRILMVGLDAAGKT 10 20 30 70 80 90 100 110 120 bm0466 TILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 TILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 40 50 60 70 80 90 130 140 150 160 170 180 bm0466 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|106 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHR 100 110 120 130 140 150 190 200 210 bm0466 NWYIQATCATSGDGLYEGLDWLSNQLRNQK :::::::::::::::::::::::::::::: gi|106 NWYIQATCATSGDGLYEGLDWLSNQLRNQK 160 170 180 >>gi|38174142|gb|AAH61435.1| Hypothetical protein MGC760 (181 aa) initn: 1187 init1: 1187 opt: 1187 Z-score: 1443.0 bits: 273.8 E(): 9.9e-72 Smith-Waterman score: 1187; 98.895% identity (100.000% similar) in 181 aa overlap (33-213:1-181) 10 20 30 40 50 60 bm0466 RHLVGAKPTPGSEQQPLRCPWPVSFHLSTSMGNIFANLFKGLFGKKEMRILMVGLDAAGK :::.:::::::::::::::::::::::::: gi|381 MGNVFANLFKGLFGKKEMRILMVGLDAAGK 10 20 30 70 80 90 100 110 120 bm0466 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|381 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 40 50 60 70 80 90 130 140 150 160 170 180 bm0466 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|381 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 100 110 120 130 140 150 190 200 210 bm0466 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK :::::::::::::::::::::::::::::.: gi|381 RNWYIQATCATSGDGLYEGLDWLSNQLRNHK 160 170 180 >>gi|27503439|gb|AAH42337.1| Arf2-prov protein [Xenopus (181 aa) initn: 1182 init1: 1182 opt: 1182 Z-score: 1436.9 bits: 272.7 E(): 2.1e-71 Smith-Waterman score: 1182; 98.895% identity (99.448% similar) in 181 aa overlap (33-213:1-181) 10 20 30 40 50 60 bm0466 RHLVGAKPTPGSEQQPLRCPWPVSFHLSTSMGNIFANLFKGLFGKKEMRILMVGLDAAGK :::::::::::::::::::::::::::::: gi|275 MGNIFANLFKGLFGKKEMRILMVGLDAAGK 10 20 30 70 80 90 100 110 120 bm0466 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|275 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 40 50 60 70 80 90 130 140 150 160 170 180 bm0466 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: gi|275 VVDSNDRERVNEAREELTRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 100 110 120 130 140 150 190 200 210 bm0466 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK :::::::::::::::::::::::::::.::: gi|275 RNWYIQATCATSGDGLYEGLDWLSNQLKNQK 160 170 180 >>gi|119889252|ref|XP_001253266.1| PREDICTED: similar to (181 aa) initn: 1181 init1: 1181 opt: 1181 Z-score: 1435.7 bits: 272.5 E(): 2.5e-71 Smith-Waterman score: 1181; 98.895% identity (99.448% similar) in 181 aa overlap (33-213:1-181) 10 20 30 40 50 60 bm0466 RHLVGAKPTPGSEQQPLRCPWPVSFHLSTSMGNIFANLFKGLFGKKEMRILMVGLDAAGK :::::::::::::::::::::::::::::: gi|119 MGNIFANLFKGLFGKKEMRILMVGLDAAGK 10 20 30 70 80 90 100 110 120 bm0466 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|119 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWHVGGQDKIRPLWRHYFQNTQGLIF 40 50 60 70 80 90 130 140 150 160 170 180 bm0466 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH ::::::::::::::::::::::::::::::::.::::::::::::::::::::::::::: gi|119 VVDSNDRERVNEAREELMRMLAEDELRDAVLLLFANKQDLPNAMNAAEITDKLGLHSLRH 100 110 120 130 140 150 190 200 210 bm0466 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK ::::::::::::::::::::::::::::::: gi|119 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK 160 170 180 >>gi|53127520|emb|CAG31143.1| hypothetical protein [Gall (181 aa) initn: 1177 init1: 1177 opt: 1177 Z-score: 1430.9 bits: 271.6 E(): 4.6e-71 Smith-Waterman score: 1177; 98.895% identity (98.895% similar) in 181 aa overlap (33-213:1-181) 10 20 30 40 50 60 bm0466 RHLVGAKPTPGSEQQPLRCPWPVSFHLSTSMGNIFANLFKGLFGKKEMRILMVGLDAAGK :::::::::::::::::::::::::::::: gi|531 MGNIFANLFKGLFGKKEMRILMVGLDAAGK 10 20 30 70 80 90 100 110 120 bm0466 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|531 TTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 40 50 60 70 80 90 130 140 150 160 170 180 bm0466 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|531 VVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRH 100 110 120 130 140 150 190 200 210 bm0466 RNWYIQATCATSGDGLYEGLDWLSNQLRNQK ::::::::::: :::::::::::::::::: gi|531 RNWYIQATCATPRDGLYEGLDWLSNQLRNQK 160 170 180 213 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 21:12:21 2008 done: Thu Aug 7 21:15:10 2008 Total Scan time: 655.950 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]