hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21151162/chunk_1/iprscan-20080807-21151162.nocrc
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Query sequence: bm04669
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00025.11.fs ADP-ribosylation factor family                 423.1   7.3e-128   1
PF00025.11.ls ADP-ribosylation factor family                 425.0   9.5e-125   1
PF00071.12.ls Ras family                                     -49.3    1.3e-05   1
PF08477.3.ls Miro-like protein                               20.4    5.3e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00025.11.fs   1/1      36   209 ..     1   186 []   423.1 7.3e-128
PF00025.11.ls   1/1      36   209 ..     1   186 []   425.0 9.5e-125
PF08477.3.ls   1/1      51   161 ..     1   139 []    20.4  5.3e-05
PF00071.12.ls   1/1      51   211 ..     1   174 []   -49.3  1.3e-05

Alignments of top-scoring domains:
PF00025.11.fs: domain 1 of 1, from 36 to 209: score 423.1, E = 7.3e-128
                   *->gflkiflkllglwnKEmRILiLGLDnAGKTTILykLklgevvttiPT
                      +f  +f+ l+g  +KEmRIL++GLD+AGKTTILykLklge+vttiPT
     bm04669    36    IFANLFKGLFG--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT 80   

                   iGFNvEtveyknvkFtvWDvGGQeslRPlWrnYfpnTdavIfVVDSaDrd
                   iGFNvEtveykn++FtvWDvGGQ+++RPlWr+Yf+nT+++IfVVDS+Dr+
     bm04669    81 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 130  

                   RieeakeELhaLLneeeLadaplLilANKQDlpgAlseaEireaLgLhel
                   R +ea+eEL ++L e+eL+da+lL++ANKQDlp+A+++aEi+++LgLh+l
     bm04669   131 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 180  

                   kgskgkVtlegdRpWeiqgcsAvkGeGLyEGldWLsnni<-*
                   +           R+W+iq+++A++G+GLyEGldWLsn++   
     bm04669   181 R-H---------RNWYIQATCATSGDGLYEGLDWLSNQL    209  

PF00025.11.ls: domain 1 of 1, from 36 to 209: score 425.0, E = 9.5e-125
                   *->gflkiflkllglwnKEmRILiLGLDnAGKTTILykLklgevvttiPT
                      +f  +f+ l+g  +KEmRIL++GLD+AGKTTILykLklge+vttiPT
     bm04669    36    IFANLFKGLFG--KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPT 80   

                   iGFNvEtveyknvkFtvWDvGGQeslRPlWrnYfpnTdavIfVVDSaDrd
                   iGFNvEtveykn++FtvWDvGGQ+++RPlWr+Yf+nT+++IfVVDS+Dr+
     bm04669    81 IGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE 130  

                   RieeakeELhaLLneeeLadaplLilANKQDlpgAlseaEireaLgLhel
                   R +ea+eEL ++L e+eL+da+lL++ANKQDlp+A+++aEi+++LgLh+l
     bm04669   131 RVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 180  

                   kgskgkVtlegdRpWeiqgcsAvkGeGLyEGldWLsnni<-*
                   +           R+W+iq+++A++G+GLyEGldWLsn++   
     bm04669   181 R-H---------RNWYIQATCATSGDGLYEGLDWLSNQL    209  

PF08477.3.ls: domain 1 of 1, from 51 to 161: score 20.4, E = 5.3e-05
                   *->kvvViGdkgvGKSSllqallgeefppniPrvLpkkklpreiqgstya
                      ++  +G   +GK+++l +l  +e +               ++ +t++
     bm04669    51    RILMVGLDAAGKTTILYKLKLGEIV---------------TTIPTIG 82   

                   vdtlevdgdtklenvrlkefllilwDtggr....eelkfehepiAymkta
                    +   v+ + ++         + +wD+gg+++ ++++ +      y++++
     bm04669    83 FNVETVEYKNIS---------FTVWDVGGQdkirPLWRH------YFQNT 117  

                   DavllvyDlsdpeSfervsslikwl...pnlrklgkkaiPvilvgnKlD<
                    + ++v+D+ d+e  +++++ +++   +++lr+       +++++nK+D 
     bm04669   118 QGLIFVVDSNDRERVNEAREELMRMlaeDELRD-----AVLLVFANKQD  161  

                   -*
                     
     bm04669     -    -    

PF00071.12.ls: domain 1 of 1, from 51 to 211: score -49.3, E = 1.3e-05
                   *->KlVlvGDgGVGKSsLliRFtdnkFpeeYipTIGvDFytktvevdgkt
                       +++vG  + GK+++l+    ++ ++  ipTI   F + tve+  k 
     bm04669    51    RILMVGLDAAGKTTILYKLKLGEIVTT-IPTI--GFNVETVEY--KN 92   

                   vkLqIWDTAGQErFralrpaYYRgAqGfLLVYDITsrdSFenvkkWleei
                   + + +WD  GQ + r l + Y+ ++qG + V D ++r   e+v   +ee+
     bm04669    93 ISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREEL 139  

                   lrhadkde..nvpivLVGNKcDLeddedlele.kqkRqVsteeGealAke
                    r+  +de ++ + +   NK DL +        +   +++ + G     +
     bm04669   140 MRMLAEDElrDAVLLVFANKQDLPN------AmNA-AEITDKLGL-HSLR 181  

                   lgAlpFmE.TSAKtneNVeeaFeelareilk<-*
                   +    ++  T A ++++  e  ++l  ++++   
     bm04669   182 HR-NWYIQaTCATSGDGLYEGLDWLSNQLRN    211  

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