hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21151162/chunk_1/iprscan-20080807-21151162.nocrc
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Query sequence: bm04669
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00177                                                 491.8   3.1e-143   1
SM00178                                                  98.6    7.3e-25   1
SM00175                                                 -74.1     0.0075   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00178     1/1      31   209 ..     1   199 []    98.6  7.3e-25
SM00177     1/1      33   213 .]     1   181 []   491.8 3.1e-143
SM00175     1/1      50   212 ..     1   172 []   -74.1   0.0075

Alignments of top-scoring domains:
SM00178: domain 1 of 1, from 31 to 209: score 98.6, E = 7.3e-25
                   *->fdWFydvLAsL..GLw.nKhaKlLFLGLDnAGKttLLHmLKndRLav
                           ++ A L +GL+++K+ ++L +GLD AGKtt+L  LK   +++
     bm04669    31    -TSMGNIFANLfkGLFgKKEMRILMVGLDAAGKTTILYKLKLGEIVT 76   

                   lqPtlHPtsEELaiGnikFttFDLGGHqqARRlWkDYfpevngivyLvDa
                     Pt     E +   ni Ft +D+GG  + R lW+ Yf + +g++++vD+
     bm04669    77 TIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDS 126  

                   aDkERfaEskaELDALlaieeLadvPFliLGnKiDaPnAvsEdELraaLG
                    D+ER++E++ EL  +la +eL+d   l+  nK D PnA+  +E+  +LG
     bm04669   127 NDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLG 176  

                   LlntttskrkvtlgdsgvrpvskpvpgirpiEvFmCsvvlrqGYgEgFkW
                   L                 r             +         G  Eg  W
     bm04669   177 LHSLR------------HRNW----------YIQATCATSGDGLYEGLDW 204  

                   LsqYi<-*
                   Ls  +   
     bm04669   205 LSNQL    209  

SM00177: domain 1 of 1, from 33 to 213: score 491.8, E = 3.1e-143
                   *->mGliaakllsklFGnKEmRiLmvGLDaAGKttiLYKLKLGevvttiP
                      mG+i+a+l+++lFG+KEmRiLmvGLDaAGKttiLYKLKLGe+vttiP
     bm04669    33    MGNIFANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIP 79   

                   tiGFnvEtveYKnisFtvWDvGGqDkiRpLWRHYyrntqGliFvvDsnDR
                   tiGFnvEtveYKnisFtvWDvGGqDkiRpLWRHY++ntqGliFvvDsnDR
     bm04669    80 TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 129  

                   eRidEAReelqRilnedElRdAvlLvFAnKqDLPdAmkaaEiteKLGLhs
                   eR++EAReel+R+l+edElRdAvlLvFAnKqDLP+Am+aaEit+KLGLhs
     bm04669   130 ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS 179  

                   iRdRnWyiqatCAtsGdGLYEGLeWLsnnlknqk<-*
                   +R+RnWyiqatCAtsGdGLYEGL+WLsn+l+nqk   
     bm04669   180 LRHRNWYIQATCATSGDGLYEGLDWLSNQLRNQK    213  

SM00175: domain 1 of 1, from 50 to 212: score -74.1, E = 0.0075
                   *->FKiilIGDSGVGKSsLLsRFtddkFsedsksTIGVDFktktievdGk
                      ++i+ +G  + GK+ +L+  + ++    +++TIG  F + t+e+  k
     bm04669    50    MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIG--FNVETVEY--K 91   

                   rvKLQIWDTAGQERFRSiTssYYRGAvGalLVYDiTnreSFenlknWlke
                    +   +WD  GQ + R + ++Y  + +G ++V D  +r   e++   ++e
     bm04669    92 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREE 138  

                   lreyadpp.penvvimLVGNKsDLee...qRqVstEeaekficDcAeehg
                   l ++  + +  + v ++ +NK DL +  +  +++ + +         +h 
     bm04669   139 LMRMLAEDeLRDAVLLVFANKQDLPNamnAAEITDKLGLHS-----LRHR 183  

                   llFifETSAKtntNVeeAFeelakkIlkr<-*
                     +i  T A  +    e    l  ++ ++   
     bm04669   184 NWYIQATCATSGDGLYEGLDWLSNQLRNQ    212  

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