hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21151162/chunk_1/iprscan-20080807-21151162.nocrc
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Query sequence: bm04669
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
TIGR00231 small_GTP: small GTP-binding protein domain    70.9    1.4e-18   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
TIGR00231   1/1      47   207 ..     1   186 []    70.9  1.4e-18

Alignments of top-scoring domains:
TIGR00231: domain 1 of 1, from 47 to 207: score 70.9, E = 1.4e-18
                   *->lkdikigivGdpnvGkstllnrllgnkgsitesgptdgttrdyvtes
                       k+++i++vG +++Gk+t+l++l+  + ++t   p  +++++++t  
     bm04669    47    KKEMRILMVGLDAAGKTTILYKLKLGE-IVTTI-P--TIGFNVET-- 87   

                   ieedgktitgatfqWgykfnllDtpGlhrqedydalrrlyypevlsslev
                   +e+++           + f+++D++G   q++ ++l+r+y++ + ++++v
     bm04669    88 VEYKN-----------ISFTVWDVGG---QDKIRPLWRHYFQNTQGLIFV 123  

                   ldlvilvldvedglekdtkeiihhadkygvpillvgnkidlkdekpgyfv
                   +d + + ++v+++  ++++ +  + +  ++++l+++nk+dl+++     +
     bm04669   124 VDSNDR-ERVNEAR-EELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEI 171  

                   dlkphlaslfaklngephfiplsaetgkgidslfglvea<-*
                   + k  l sl++++     +  + a  g+g+ ++ + + +   
     bm04669   172 TDKLGLHSLRHRNWY---IQATCATSGDGLYEGLDWLSN    207  

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