hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21214748/chunk_1/iprscan-20080807-21214748.nocrc
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Query sequence: bm04679
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08075.2.fs NOPS (NUC059) domain                           131.0    1.9e-51   1
PF08075.2.ls NOPS (NUC059) domain                           133.0    7.6e-37   1
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or    130.0      6e-36   2
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or    127.0    4.8e-35   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.ls   1/2      93   158 ..     1    74 []    78.1  2.5e-20
PF00076.12.fs   1/2      93   158 ..     1    74 []    76.3  1.3e-20
PF00076.12.fs   2/2     167   227 ..     1    64 [.    50.8  1.8e-13
PF00076.12.ls   2/2     167   238 ..     1    74 []    51.9    2e-12
PF08075.2.fs   1/1     238   289 ..     1    53 []   131.0  1.9e-51
PF08075.2.ls   1/1     238   289 ..     1    53 []   133.0  7.6e-37

Alignments of top-scoring domains:
PF00076.12.ls: domain 1 of 2, from 93 to 158: score 78.1, E = 2.5e-20
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVgNLppd+tee+ ++lF+k+G+  ++ i +D        kGf+F+
     bm04679    93    LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--------KGFGFI 131  

                   eFedeedAekAldalnGkelggrelrv<-*
                   + e+   Ae A+ +l+++ l+g+ lrv   
     bm04679   132 RLETRTLAEIAKVELDNMPLRGKQLRV    158  

PF00076.12.fs: domain 1 of 2, from 93 to 158: score 76.3, E = 1.3e-20
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      lfVgNLppd+tee+ ++lF+k+G+  ++ i +D        kGf+F+
     bm04679    93    LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--------KGFGFI 131  

                   eFedeedAekAldalnGkelggrelrv<-*
                   + e+   Ae A+ +l+++ l+g+ lrv   
     bm04679   132 RLETRTLAEIAKVELDNMPLRGKQLRV    158  

PF00076.12.fs: domain 2 of 2, from 167 to 227: score 50.8, E = 1.8e-13
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V+NLp++++ e L+++Fs fG++e++ ++ D     gr+ G + V
     bm04679   167    LTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD---DRGRPSGKGIV 210  

                   eFedeedAekAldalnG<-*
                   eF  + +A+kAld + +   
     bm04679   211 EFSGKPAARKALDRCSE    227  

PF00076.12.ls: domain 2 of 2, from 167 to 238: score 51.9, E = 2e-12
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V+NLp++++ e L+++Fs fG++e++ ++ D     gr+ G + V
     bm04679   167    LTVRNLPQYVSNELLEEAFSVFGQVERAVVIVD---DRGRPSGKGIV 210  

                   eFedeedAekAldalnG.kelggrelrv<-*
                   eF  + +A+kAld + ++  l     r    
     bm04679   211 EFSGKPAARKALDRCSEgSFLLTTFPRP    238  

PF08075.2.fs: domain 1 of 1, from 238 to 289: score 131.0, E = 1.9e-51
                   *->PvivEpmEqlDdeDGLPEKllnKkspdyqkERelgPRFAqpgSFEyE
                      Pv+vEpm+qlDde+GLPEKl  K+ ++++kERe++PRFAqpgSFEyE
     bm04679   238    PVTVEPMDQLDDEEGLPEKLVIKN-QQFHKEREQPPRFAQPGSFEYE 283  

                   YgsRWK<-*
                   Y++RWK   
     bm04679   284 YAMRWK    289  

PF08075.2.ls: domain 1 of 1, from 238 to 289: score 133.0, E = 7.6e-37
                   *->PvivEpmEqlDdeDGLPEKllnKkspdyqkERelgPRFAqpgSFEyE
                      Pv+vEpm+qlDde+GLPEKl  K+ ++++kERe++PRFAqpgSFEyE
     bm04679   238    PVTVEPMDQLDDEEGLPEKLVIKN-QQFHKEREQPPRFAQPGSFEYE 283  

                   YgsRWK<-*
                   Y++RWK   
     bm04679   284 YAMRWK    289  

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