hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21214748/chunk_1/iprscan-20080807-21214748.nocrc
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Query sequence: bm04679
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 132.0    6.4e-35   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/2      92   159 ..     1   121 []    84.3  1.4e-20
SM00360    2/2     166   242 ..     1   121 []    47.7  1.6e-09

Alignments of top-scoring domains:
SM00360: domain 1 of 2, from 92 to 159: score 84.3, E = 1.4e-20
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +lfVgNL  ppd+tee++r+lF              +k+Gk  +v i
     bm04679    92    RLFVGNL--PPDITEEEMRKLF--------------EKYGKAGEVFI 122  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    +d                           kGf+F++ e++  Ae A   
     bm04679   123 HKD---------------------------KGFGFIRLETRTLAEIA--K 143  

                   ealnaskGkeledgGrptlglrVe<-*
                    +l+   +++l   G++   lrV+   
     bm04679   144 VELD---NMPL--RGKQ---LRVR    159  

SM00360: domain 2 of 2, from 166 to 242: score 47.7, E = 1.6e-09
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      +l V+NL  p  v+ e L+e+F              s fG v+++ +
     bm04679   166    SLTVRNL--PQYVSNELLEEAF--------------SVFGQVERAVV 196  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   + d                        G++ G + VeF+ + +A+kA  +
     bm04679   197 IVDDR----------------------GRPSGKGIVEFSGKPAARKA--L 222  

                   ealnaskGkeledgGrptlglrVe<-*
                   +    ++ + l++  rp   ++Ve   
     bm04679   223 DRCS-EGSFLLTTFPRP---VTVE    242  

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