hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-00315707/chunk_1/iprscan-20090618-00315707.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm04741 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05470.3.ls Eukaryotic translation initiation factor 3 s 1503.4 0 1 PF05470.3.fs Eukaryotic translation initiation factor 3 s 1501.6 0 1 PF01399.17.ls PCI domain 154.2 3.2e-43 1 PF01399.17.fs PCI domain 152.3 1.2e-42 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05470.3.fs 1/1 35 711 .. 1 695 [] 1501.6 0 PF05470.3.ls 1/1 35 711 .. 1 695 [] 1503.4 0 PF01399.17.fs 1/1 718 852 .. 1 135 [] 152.3 1.2e-42 PF01399.17.ls 1/1 718 852 .. 1 135 [] 154.2 3.2e-43 Alignments of top-scoring domains: PF05470.3.fs: domain 1 of 1, from 35 to 711: score 1501.6, E = 0 *->kylrddssdessDEeDtKRVVKSaKDKRFEEltsiiktiknAmkinD +++++++ +s+DEeDtKRVV+SaKDKRFEElt++i+ti+nAmki+D bm04741 35 GNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRD 81 wvslleeFDkLnKayqKakrvvqkenvktPrfYIkvLaeLEDflNelwaD ++++leeF++L+Kay+Kak++v +++++PrfYI++La+LED+lNelw+D bm04741 82 VTKCLEEFELLGKAYGKAKSIV--DKEGVPRFYIRILADLEDYLNELWED 129 keakkklsknNaKALntLrQKvKKynkDqqfEDditkyRedPEqedeeee ke+kkk++knNaKAL+tLrQK++Kyn+ +fE++it+y+++PEq+++e++ bm04741 130 KEGKKKMNKNNAKALSTLRQKIRKYNR--DFESHITSYKQNPEQSADEDA 177 ededddddGsddedededgvkateevka.....sseSakakkkmdddddd e++++d++Gs+dedededgv+a++++k++++ +s+eS+k++kkmdd+d+d bm04741 178 EKNEEDSEGSSDEDEDEDGVSAATFLKKkseapSGESRKFLKKMDDEDED 227 ddssewdsdsesesessddese..............kkeqlerylKkaaE +++se+d+d++++s+ssd++se+++++++ ++ kk+++++++KkaaE bm04741 228 SEDSEDDEDWDTGSTSSDSDSEeeegkqtalasrflKKAPTTDEDKKAAE 277 kkkedkvkkKddrKekklkedrekeddeededeklskkdrleepkmfkkp kk+edk+kkK+drK+k+l+e++e+++++e+e++++++++++e+pkmf+k+ bm04741 278 KKREDKAKKKHDRKSKRLDEEEEDNEGGEWERVRGGVPLVKEKPKMFAKG 327 eEIThdvviKKLkEIlsARGKKgTdRseqielLeeLlkIAetpaqGlgvk +EITh+vviKKL+EIl+ARGKKgTdR++qielL+ L++IA+++++G+gv+ bm04741 328 TEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQIAAENNLGEGVI 377 vkIkFsiIsarFDvNaglsgyMpievWkkcLqnmnslLDILvanpnIvvv vkIkF+iI++++D+N++l++yM++e+W+kcL+++n+l+DIL+anpnI+v+ bm04741 378 VKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFVG 427 eevaDevEeledetkepedadGpirVqGsilafvERLDdEFtKsLQniDP e++++e+E+l+ +ad+p+rV+G+il++vER+D+EFtK++Qn+DP bm04741 428 ENILEESENLH-------NADQPLRVRGCILTLVERMDEEFTKIMQNTDP 470 HSndYveRLKDEpsvyaLiervQkYlErtGdseidlekevcrvylrRieh HS++Yve+LKDE++v+a+iervQ+YlE++G++ +evcr+yl+Ri+h bm04741 471 HSQEYVEHLKDEAQVCAIIERVQRYLEEKGTT-----EEVCRIYLLRILH 515 iYYKpeevieamrkLAelevEeeneEeakeeeniipsfivskelvkrkpa +YYK+++++ ++++++p++++sk++++++++ bm04741 516 TYYKFDYKA--------------------HQRQLTPPEGSSKSEQDQAEN 545 ttedsdaLMDkLckyIYakdgdeRirtRAmLChIYhhALhdnFytARDLL ++eds++LM++LckyIYakd+++Rirt+A+LChIYhhALh+++y+ARDL+ bm04741 546 EGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLM 595 LMSHLQdNIqhaDisTQILfNRtMvQLGLCAFRqGlikEaHqcLsdLqst LMSHLQdNIqhaD+++QIL+NRtMvQLG+CAFRqGl+k+aH++L+d+qs+ bm04741 596 LMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSS 645 gRvKELLgQGvlqrrqhEktpEQekiERrRQClPYHMHINLELLEcVYLt gR+KELLgQG+l r+++E+++EQek+ERrRQ +P+H+HINLELLEcVYL+ bm04741 646 GRAKELLGQGLLLRSLQERNQEQEKVERRRQ-VPFHLHINLELLECVYLV 694 CaMLLEIPnMAAnesda<-* +aMLLEIP+MAA+esda bm04741 695 SAMLLEIPYMAAHESDA 711 PF05470.3.ls: domain 1 of 1, from 35 to 711: score 1503.4, E = 0 *->kylrddssdessDEeDtKRVVKSaKDKRFEEltsiiktiknAmkinD +++++++ +s+DEeDtKRVV+SaKDKRFEElt++i+ti+nAmki+D bm04741 35 GNYGKQPLLLSEDEEDTKRVVRSAKDKRFEELTNLIRTIRNAMKIRD 81 wvslleeFDkLnKayqKakrvvqkenvktPrfYIkvLaeLEDflNelwaD ++++leeF++L+Kay+Kak++v +++++PrfYI++La+LED+lNelw+D bm04741 82 VTKCLEEFELLGKAYGKAKSIV--DKEGVPRFYIRILADLEDYLNELWED 129 keakkklsknNaKALntLrQKvKKynkDqqfEDditkyRedPEqedeeee ke+kkk++knNaKAL+tLrQK++Kyn+ +fE++it+y+++PEq+++e++ bm04741 130 KEGKKKMNKNNAKALSTLRQKIRKYNR--DFESHITSYKQNPEQSADEDA 177 ededddddGsddedededgvkateevka.....sseSakakkkmdddddd e++++d++Gs+dedededgv+a++++k++++ +s+eS+k++kkmdd+d+d bm04741 178 EKNEEDSEGSSDEDEDEDGVSAATFLKKkseapSGESRKFLKKMDDEDED 227 ddssewdsdsesesessddese..............kkeqlerylKkaaE +++se+d+d++++s+ssd++se+++++++ ++ kk+++++++KkaaE bm04741 228 SEDSEDDEDWDTGSTSSDSDSEeeegkqtalasrflKKAPTTDEDKKAAE 277 kkkedkvkkKddrKekklkedrekeddeededeklskkdrleepkmfkkp kk+edk+kkK+drK+k+l+e++e+++++e+e++++++++++e+pkmf+k+ bm04741 278 KKREDKAKKKHDRKSKRLDEEEEDNEGGEWERVRGGVPLVKEKPKMFAKG 327 eEIThdvviKKLkEIlsARGKKgTdRseqielLeeLlkIAetpaqGlgvk +EITh+vviKKL+EIl+ARGKKgTdR++qielL+ L++IA+++++G+gv+ bm04741 328 TEITHAVVIKKLNEILQARGKKGTDRAAQIELLQLLVQIAAENNLGEGVI 377 vkIkFsiIsarFDvNaglsgyMpievWkkcLqnmnslLDILvanpnIvvv vkIkF+iI++++D+N++l++yM++e+W+kcL+++n+l+DIL+anpnI+v+ bm04741 378 VKIKFNIIASLYDYNPNLATYMKPEMWGKCLDCINELMDILFANPNIFVG 427 eevaDevEeledetkepedadGpirVqGsilafvERLDdEFtKsLQniDP e++++e+E+l+ +ad+p+rV+G+il++vER+D+EFtK++Qn+DP bm04741 428 ENILEESENLH-------NADQPLRVRGCILTLVERMDEEFTKIMQNTDP 470 HSndYveRLKDEpsvyaLiervQkYlErtGdseidlekevcrvylrRieh HS++Yve+LKDE++v+a+iervQ+YlE++G++ +evcr+yl+Ri+h bm04741 471 HSQEYVEHLKDEAQVCAIIERVQRYLEEKGTT-----EEVCRIYLLRILH 515 iYYKpeevieamrkLAelevEeeneEeakeeeniipsfivskelvkrkpa +YYK+++++ ++++++p++++sk++++++++ bm04741 516 TYYKFDYKA--------------------HQRQLTPPEGSSKSEQDQAEN 545 ttedsdaLMDkLckyIYakdgdeRirtRAmLChIYhhALhdnFytARDLL ++eds++LM++LckyIYakd+++Rirt+A+LChIYhhALh+++y+ARDL+ bm04741 546 EGEDSAVLMERLCKYIYAKDRTDRIRTCAILCHIYHHALHSRWYQARDLM 595 LMSHLQdNIqhaDisTQILfNRtMvQLGLCAFRqGlikEaHqcLsdLqst LMSHLQdNIqhaD+++QIL+NRtMvQLG+CAFRqGl+k+aH++L+d+qs+ bm04741 596 LMSHLQDNIQHADPPVQILYNRTMVQLGICAFRQGLTKDAHNALLDIQSS 645 gRvKELLgQGvlqrrqhEktpEQekiERrRQClPYHMHINLELLEcVYLt gR+KELLgQG+l r+++E+++EQek+ERrRQ +P+H+HINLELLEcVYL+ bm04741 646 GRAKELLGQGLLLRSLQERNQEQEKVERRRQ-VPFHLHINLELLECVYLV 694 CaMLLEIPnMAAnesda<-* +aMLLEIP+MAA+esda bm04741 695 SAMLLEIPYMAAHESDA 711 PF01399.17.fs: domain 1 of 1, from 718 to 852: score 152.3, E = 1.2e-42 *->payrdLleafysgdlsdfeeiladhvm.A.Kal.kG.wqkkeellld +++++ l++ +++ l +++e +++hv+ A+Ka+++G+w++++ +++ bm04741 718 KQFHHQLRVGERQPLLGPPESMREHVVaAsKAMkMGdWKTCHSFIIN 764 pglaekvw.l.e.gdkhledLrrkirelnlrrlakfty.sapYssislsd +++ kvw+l +++dk+ ++L+rki+e++l r+++fty+s+ Y sis+++ bm04741 765 EKMNGKVWdLfPeADKVRTMLVRKIQEESL-RTYLFTYsSV-YDSISMET 812 lakllglsvvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-* l+ +++l+ + v++i+sk+I+++++++++Dq++++vv+++ bm04741 813 LSDMFELDL------PTVHSIISKMIINEELMASLDQPTQTVVMHR 852 PF01399.17.ls: domain 1 of 1, from 718 to 852: score 154.2, E = 3.2e-43 *->payrdLleafysgdlsdfeeiladhvm.A.Kal.kG.wqkkeellld +++++ l++ +++ l +++e +++hv+ A+Ka+++G+w++++ +++ bm04741 718 KQFHHQLRVGERQPLLGPPESMREHVVaAsKAMkMGdWKTCHSFIIN 764 pglaekvw.l.e.gdkhledLrrkirelnlrrlakfty.sapYssislsd +++ kvw+l +++dk+ ++L+rki+e++l r+++fty+s+ Y sis+++ bm04741 765 EKMNGKVWdLfPeADKVRTMLVRKIQEESL-RTYLFTYsSV-YDSISMET 812 lakllglsvvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-* l+ +++l+ + v++i+sk+I+++++++++Dq++++vv+++ bm04741 813 LSDMFELDL------PTVHSIISKMIINEELMASLDQPTQTVVMHR 852 //