hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00315707/chunk_1/iprscan-20090618-00315707.nocrc
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Query sequence: bm04741
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00088                                                  96.8    2.6e-24   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00088    1/1     784   872 ..     1    92 []    96.8  2.6e-24

Alignments of top-scoring domains:
SM00088: domain 1 of 1, from 784 to 872: score 96.8, E = 2.6e-24
                   *->qhverLqrkiretnllqlsepYPssislsdlakllglsvpeevEklv
                      ++v+++q++ ++t+l+++s++Y +sis+++l+++++l+ p+ v++++
     bm04741   784    MLVRKIQEESLRTYLFTYSSVY-DSISMETLSDMFELDLPT-VHSII 828  

                   skaIrdgeisakIDqvngivefeevdpryltsnqlaqlaerlkkl<-*
                   sk+I+++e++a++Dq++++v++++++p  + +n   qlae+l +l   
     bm04741   829 SKMIINEELMASLDQPTQTVVMHRTEPTAQ-QNLALQLAEKLGSL    872  

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