hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00380376/chunk_1/iprscan-20090618-00380376.nocrc
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Query sequence: bm04749
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00530.9.ls Scavenger receptor cysteine-rich domain        131.7    1.9e-36   1
PF00530.9.fs Scavenger receptor cysteine-rich domain        129.9      4e-36   1
PF07707.5.fs BTB And C-terminal Kelch                        30.3    1.5e-07   1
PF07707.5.ls BTB And C-terminal Kelch                        32.6    1.3e-06   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00530.9.fs   1/1      71   168 ..     1   113 []   129.9    4e-36
PF00530.9.ls   1/1      71   168 ..     1   113 []   131.7  1.9e-36
PF07707.5.ls   1/1     304   404 ..     1   103 []    32.6  1.3e-06
PF07707.5.fs   1/1     305   404 ..     2   103 .]    30.3  1.5e-07

Alignments of top-scoring domains:
PF00530.9.fs: domain 1 of 1, from 71 to 168: score 129.9, E = 4e-36
                   *->vgGssrCeGrVEVrhdgskWgtVCdssWslrdanvdpQaskvCrqLG
                       +G+  ++GrVE++++g +WgtVCd+ W+l da+v      vCr+LG
     bm04749    71    ADGGATNQGRVEIFYRG-QWGTVCDNLWDLTDASV------VCRALG 110  

                   CGgavsll.gpyfsegggPagqreiwldgvnCsGnEtsLsqCpvrvtppg
                   + +a ++l+++ f++g+gP     i ld+v+C+G+E+sL +C       +
     bm04749   111 FENATQALgRAAFGQGSGP-----IMLDEVQCTGTEASLADCKSL---GW 152  

                   lsrqcshdgedagVvCs<-*
                   l+ +c+h  +dagVvC    
     bm04749   153 LKSNCRH-ERDAGVVCT    168  

PF00530.9.ls: domain 1 of 1, from 71 to 168: score 131.7, E = 1.9e-36
                   *->vgGssrCeGrVEVrhdgskWgtVCdssWslrdanvdpQaskvCrqLG
                       +G+  ++GrVE++++g +WgtVCd+ W+l da+v      vCr+LG
     bm04749    71    ADGGATNQGRVEIFYRG-QWGTVCDNLWDLTDASV------VCRALG 110  

                   CGgavsll.gpyfsegggPagqreiwldgvnCsGnEtsLsqCpvrvtppg
                   + +a ++l+++ f++g+gP     i ld+v+C+G+E+sL +C       +
     bm04749   111 FENATQALgRAAFGQGSGP-----IMLDEVQCTGTEASLADCKSL---GW 152  

                   lsrqcshdgedagVvCs<-*
                   l+ +c+h  +dagVvC    
     bm04749   153 LKSNCRH-ERDAGVVCT    168  

PF07707.5.ls: domain 1 of 1, from 304 to 404: score 32.6, E = 1.3e-06
                   *->CLgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLie
                       L+++ +A a g   L +++++f+ +nF+++ + e + + + + L+ 
     bm04749   304    PLDLYAYAVATGDALLEKLCLQFLAWNFEALTQAEAWPSVPTDLLQL 350  

                   lLssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspky
                   lL +++L VpsE  +++Av  W   + +  ++ +  L +++R+p++ p++
     bm04749   351 LLPRSDLAVPSELALLKAVDTWSWGERA-SHEEVEGLVEKIRFPMMLPEE 399  

                   Llevve<-*
                   L e ++   
     bm04749   400 LFE-LQ    404  

PF07707.5.fs: domain 1 of 1, from 305 to 404: score 30.3, E = 1.5e-07
                   *->LgIrrfAdaygceeLaeaAdrfilqnFleVakseEFlqLskeqLiel
                      L+++ +A a g   L +++++f+ +nF+++ + e + + + + L+ l
     bm04749   305    LDLYAYAVATGDALLEKLCLQFLAWNFEALTQAEAWPSVPTDLLQLL 351  

                   LssDeLnVpsEeeVfeAvmrWvkhdvenRkkhlpeLLshVRLpLLspkyL
                   L +++L VpsE  +++Av  W   + +  ++ +  L +++R+p++ p++L
     bm04749   352 LPRSDLAVPSELALLKAVDTWSWGERA-SHEEVEGLVEKIRFPMMLPEEL 400  

                   levve<-*
                    e ++   
     bm04749   401 FE-LQ    404  

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