hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21334104/chunk_1/iprscan-20080807-21334104.nocrc
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Query sequence: bm04768
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00554.13.fs Rel homology domain (RHD)                      123.9    5.3e-35   1
PF00554.13.ls Rel homology domain (RHD)                       83.3    6.8e-22   1
PF01833.14.fs IPT/TIG domain                                  67.0    1.1e-18   1
PF01833.14.ls IPT/TIG domain                                  68.8    1.6e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00554.13.ls   1/1      27   158 ..     1   199 []    83.3  6.8e-22
PF00554.13.fs   1/1      33   158 ..    44   199 .]   123.9  5.3e-35
PF01833.14.fs   1/1     166   263 ..     1   104 []    67.0  1.1e-18
PF01833.14.ls   1/1     166   263 ..     1   104 []    68.8  1.6e-17

Alignments of top-scoring domains:
PF00554.13.ls: domain 1 of 1, from 27 to 158: score 83.3, E = 6.8e-22
                   *->LeIvEQPkQRGmRFRYkCEMGRSaGSIpGmesStrskKTfPtVqicn
                            P+ R                  G              q+ +
     bm04768    27    ------PRAR------------------G-------------LQLLG 36   

                   YdGpavtirVsLVTkdeP.hrPHpFYQvHsLVGKessd.CkdGkvDvtdv
                   Y ++++ ++ +++T+d++ +rPH+FYQvH+++GK++++ +++  +  t+v
     bm04768    37 YNEKPINLQMFIGTADDRyLRPHAFYQVHRITGKTVATaSQEIIIASTKV 86   

                   cevevgPetdmvasFqNLGIqcVkKKdveealkeRikkqlvremnrreln
                    e+++ Pe++m as+++ GI++ ++ d+e ++               e++
     bm04768    87 LEIPLLPENNMSASIDCAGILKLRNSDIELRKG--------------ETD 122  

                   idpfneveqealrqikdmDLnvVRLCFqaflepdstGnftlplpPVvSnP
                   i ++n               ++VRL+F++++   +++ ++++ +++ S P
     bm04768   123 IGRKN---------------TRVRLVFRVHI---PQPSGKVLSLQIASIP 154  

                   IyDk<-*
                   ++++   
     bm04768   155 VECS    158  

PF00554.13.fs: domain 1 of 1, from 33 to 158: score 123.9, E = 5.3e-35
                   *->qicnYdGpavtirVsLVTkdeP.hrPHpFYQvHsLVGKessd.CkdG
                      q+ +Y ++++ ++ +++T+d++ +rPH+FYQvH+++GK++++ +++ 
     bm04768    33    QLLGYNEKPINLQMFIGTADDRyLRPHAFYQVHRITGKTVATaSQEI 79   

                   kvDvtdvcevevgPetdmvasFqNLGIqcVkKKdveealkeRikkqlvre
                    +  t+v e+++ Pe++m as+++ GI++ ++ d+e ++           
     bm04768    80 IIASTKVLEIPLLPENNMSASIDCAGILKLRNSDIELRKG---------- 119  

                   mnrrelnidpfneveqealrqikdmDLnvVRLCFqaflepdstGnftlpl
                       e++i ++n               ++VRL+F++++   +++ ++++ 
     bm04768   120 ----ETDIGRKN---------------TRVRLVFRVHI---PQPSGKVLS 147  

                   pPVvSnPIyDk<-*
                   +++ S P++++   
     bm04768   148 LQIASIPVECS    158  

PF01833.14.fs: domain 1 of 1, from 166 to 263: score 67.0, E = 1.1e-18
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P+I+++s +s+++ GG e+++tGsn+               +  k++
     bm04768   166    PHIEKYSINSCSVNGGHEMVVTGSNFL--------------PESKII 198  

                   fggtpvpCdvisssss...........tqivCktPpva.ggpsppvvtvs
                   f ++    d+ ++++ +++  +++ ++ +iv ++Pp++++  +   v+v+
     bm04768   199 FLEKG--QDGRPQWEVegkiirekcqgAHIVLEVPPYHnPAVTAA-VQVH 245  

                   vdgggsgdgrssspvtFtY<-*
                   +++++ g+++ s++++FtY   
     bm04768   246 FYLCN-GKRKKSQSQRFTY    263  

PF01833.14.ls: domain 1 of 1, from 166 to 263: score 68.8, E = 1.6e-17
                   *->PvItsisPssgplsGGteiTitGsnlgsgsePrirkntfededikVt
                      P+I+++s +s+++ GG e+++tGsn+               +  k++
     bm04768   166    PHIEKYSINSCSVNGGHEMVVTGSNFL--------------PESKII 198  

                   fggtpvpCdvisssss...........tqivCktPpva.ggpsppvvtvs
                   f ++    d+ ++++ +++  +++ ++ +iv ++Pp++++  +   v+v+
     bm04768   199 FLEKG--QDGRPQWEVegkiirekcqgAHIVLEVPPYHnPAVTAA-VQVH 245  

                   vdgggsgdgrssspvtFtY<-*
                   +++++ g+++ s++++FtY   
     bm04768   246 FYLCN-GKRKKSQSQRFTY    263  

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