hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21392969/chunk_1/iprscan-20080807-21392969.nocrc
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Query sequence: bm04773
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00571.18.ls CBS domain pair                                151.6    1.9e-42   2
PF00571.18.fs CBS domain pair                                147.1    4.3e-41   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00571.18.fs   1/2      62   197 ..     1   114 []    67.9  5.7e-18
PF00571.18.ls   1/2      62   197 ..     1   114 []    69.9  7.8e-18
PF00571.18.ls   2/2     218   343 ..     1   114 []    81.7    2e-21
PF00571.18.fs   2/2     223   343 ..     6   114 .]    79.2  4.5e-21

Alignments of top-scoring domains:
PF00571.18.fs: domain 1 of 2, from 62 to 197: score 67.9, E = 5.7e-18
                RF    xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx xxxxxxxxxx
                   *->dvmtkdvvtvdpedttl.ealklmrengisrlPVvd.edgklvGivt
                         ++++v+ d ++  +++a+  ++ ng++++P +d++++ +vG++t
     bm04773    62    IPTSSKLVVFD-TSLQVkKAFFALVTNGVRAAPLWDsKKQSFVGMLT 107  

                RF xxxxxxxxx                   xxxxxxxxx    xxxxxxxxx
                   erDlllral...................tpvsdiMtr....pPvitvppd
                    +D ++++l++  ++      + ++++ ++ +++   ++ +p +++++p+
     bm04773   108 ITD-FINILhryyksalvqiyeleehkiETWREVYLQdsfkP-LVCISPN 155  

                RF xxx xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxx   
                   tsl.ealelmlehgirhrrlpVvD.edgklvGivtreDilrala<-*
                   +sl +a+  +++++i h rlpV+D+e g+ + i+t + il++l    
     bm04773   156 ASLfDAVSSLIRNKI-H-RLPVIDpESGNTLYILTHKRILKFLK    197  

PF00571.18.ls: domain 1 of 2, from 62 to 197: score 69.9, E = 7.8e-18
                RF    xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx xxxxxxxxxx
                   *->dvmtkdvvtvdpedttl.ealklmrengisrlPVvd.edgklvGivt
                         ++++v+ d ++  +++a+  ++ ng++++P +d++++ +vG++t
     bm04773    62    IPTSSKLVVFD-TSLQVkKAFFALVTNGVRAAPLWDsKKQSFVGMLT 107  

                RF xxxxxxxxx                   xxxxxxxxx    xxxxxxxxx
                   erDlllral...................tpvsdiMtr....pPvitvppd
                    +D ++++l++  ++      + ++++ ++ +++   ++ +p +++++p+
     bm04773   108 ITD-FINILhryyksalvqiyeleehkiETWREVYLQdsfkP-LVCISPN 155  

                RF xxx xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxx   
                   tsl.ealelmlehgirhrrlpVvD.edgklvGivtreDilrala<-*
                   +sl +a+  +++++i h rlpV+D+e g+ + i+t + il++l    
     bm04773   156 ASLfDAVSSLIRNKI-H-RLPVIDpESGNTLYILTHKRILKFLK    197  

PF00571.18.ls: domain 2 of 2, from 218 to 343: score 81.7, E = 2e-21
                RF    xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->dvmtkdvvtvdpedttl.ealklmrengisrlPVvdedgklvGivte
                           ++ +v+ ++t++  al +++++++s+lPVvde+g++v i ++
     bm04773   218    IGTYANIAMVR-TTTPVyVALGIFVQHRVSALPVVDEKGRVVDIYSK 263  

                RF xxxxxxxx         xxxxxxxxx      xxxxxxxxxxxx xxxxx
                   rDlllral.........tpvsdiMtr......pPvitvppdtsl.ealel
                    D ++++  +++ ++ +++v + ++++++  +  v+ ++ +++l++++ +
     bm04773   264 FD-VINLAaektynnldVSVTKALQHrshyfeG-VLKCYLHETLeTIINR 311  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   mlehgirhrrlpVvDedgklvGivtreDilrala<-*
                   ++e  + h rl+VvDe++ ++Giv+++Dil+al+   
     bm04773   312 LVEAEV-H-RLVVVDENDVVKGIVSLSDILQALV    343  

PF00571.18.fs: domain 2 of 2, from 223 to 343: score 79.2, E = 4.5e-21
                RF    xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->dvvtvdpedttl.ealklmrengisrlPVvdedgklvGivterDlll
                      ++ +v+ ++t++  al +++++++s+lPVvde+g++v i ++ D ++
     bm04773   223    NIAMVR-TTTPVyVALGIFVQHRVSALPVVDEKGRVVDIYSKFD-VI 267  

                RF xxx         xxxxxxxxx      xxxxxxxxxxxx xxxxxxxxxx
                   ral.........tpvsdiMtr......pPvitvppdtsl.ealelmlehg
                   ++  +++ ++ +++v + ++++++  +  v+ ++ +++l++++ +++e  
     bm04773   268 NLAaektynnldVSVTKALQHrshyfeG-VLKCYLHETLeTIINRLVEAE 316  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx   
                   irhrrlpVvDedgklvGivtreDilrala<-*
                   + h rl+VvDe++ ++Giv+++Dil+al+   
     bm04773   317 V-H-RLVVVDENDVVKGIVSLSDILQALV    343  

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