hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21392969/chunk_1/iprscan-20080807-21392969.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm04773
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00116                                                 196.1    3.2e-54   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00116    1/4      67   116 ..     1    47 []    38.2  1.1e-06
SM00116    2/4     148   197 ..     1    47 []    56.2  4.4e-12
SM00116    3/4     223   271 ..     1    47 []    54.5  1.3e-11
SM00116    4/4     295   343 ..     1    47 []    47.2  2.1e-09

Alignments of top-scoring domains:
SM00116: domain 1 of 4, from 67 to 116: score 38.2, E = 1.1e-06
                   *->dvvtvspdttleealelmrehgirrlPVVd...gkLvGIvtrrDilk
                       +v+ +++  +  a+  ++++g+r++P++d++++  vG++t +D+++
     bm04773    67    KLVVFDTSLQVKKAFFALVTNGVRAAPLWDskkQSFVGMLTITDFIN 113  

                   ala<-*
                   +l+   
     bm04773   114 ILH    116  

SM00116: domain 2 of 4, from 148 to 197: score 56.2, E = 4.4e-12
                   *->dvvtvspdttleealelmrehgirrlPVVd...gkLvGIvtrrDilk
                      ++v++sp+ +l++a++ + +++i+rlPV+d+++g+ + I+t++ ilk
     bm04773   148    PLVCISPNASLFDAVSSLIRNKIHRLPVIDpesGNTLYILTHKRILK 194  

                   ala<-*
                   +l+   
     bm04773   195 FLK    197  

SM00116: domain 3 of 4, from 223 to 271: score 54.5, E = 1.3e-11
                   *->dvvtvspdttleealelmrehgirrlPVVd..gkLvGIvtrrDilka
                      +++ v+++t++ +al ++++h++++lPVVd++g++v I+++ D++++
     bm04773   223    NIAMVRTTTPVYVALGIFVQHRVSALPVVDekGRVVDIYSKFDVINL 269  

                   la<-*
                    a   
     bm04773   270 AA    271  

SM00116: domain 4 of 4, from 295 to 343: score 47.2, E = 2.1e-09
                   *->dvvtvspdttleealelmrehgirrlPVVd..gkLvGIvtrrDilka
                       v  ++ ++tle++++ ++e  ++rl+VVd++++++GIv+++Dil+a
     bm04773   295    GVLKCYLHETLETIINRLVEAEVHRLVVVDenDVVKGIVSLSDILQA 341  

                   la<-*
                   l    
     bm04773   342 LV    343  

//