hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21454135/chunk_1/iprscan-20080807-21454135.nocrc
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Query sequence: bm04789
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00400.22.fs WD domain, G-beta repeat                        42.8    4.2e-11   2
PF00400.22.ls WD domain, G-beta repeat                        41.4    2.9e-09   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   1/2     212   234 ..    15    38 .]    22.5  2.3e-05
PF00400.22.fs   2/2     238   275 ..     1    38 []    20.3  9.2e-05
PF00400.22.ls   2/3     238   275 ..     1    38 []    22.3   0.0016

Alignments of top-scoring domains:
PF00400.22.fs: domain 1 of 2, from 212 to 234: score 22.5, E = 2.3e-05
                   *->vafspdsgpllasgSrDgtikiWd<-*
                      v+f++d  +lla+g+ Dg +++W+   
     bm04789   212    VCFNHD-NTLLATGGTDGYVRVWK    234  

PF00400.22.fs: domain 2 of 2, from 238 to 275: score 20.3, E = 9.2e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e + ++++H++ ++++a  pd    l++ +rD +  +W    
     bm04789   238    LEKVlEFkAHEGEIEDLALGPD--GKLVTVGRDLKASVWQ    275  

PF00400.22.ls: domain 2 of 3, from 238 to 275: score 22.3, E = 0.0016
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e + ++++H++ ++++a  pd    l++ +rD +  +W    
     bm04789   238    LEKVlEFkAHEGEIEDLALGPD--GKLVTVGRDLKASVWQ    275  

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