hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21454135/chunk_1/iprscan-20080807-21454135.nocrc
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Query sequence: bm04789
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  52.4    5.8e-11   4

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/4     195   234 ..     1    46 []    20.6     0.22
SM00320    2/4     237   275 ..     1    46 []    26.2   0.0046
SM00320    3/4     341   380 ..     1    46 []     3.4  1.5e+02
SM00320    4/4     383   434 ..     1    46 []     2.3  2.1e+02

Alignments of top-scoring domains:
SM00320: domain 1 of 4, from 195 to 234: score 20.6, E = 0.22
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + + ++t    +       v+f++d+      +lla+g++Dg +r+W
     bm04789   195    NlQAVQTDFSSDP--LQKVVCFNHDN------TLLATGGtDGYVRVW 233  

                   d<-*
                   +   
     bm04789   234 K    234  

SM00320: domain 2 of 4, from 237 to 275: score 26.2, E = 0.0046
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + + + ++k+H+g  ++ ++a  pdg        l++ ++D +  +W
     bm04789   237    SlEKVLEFKAHEG--EIEDLALGPDG-------KLVTVGrDLKASVW 274  

                   d<-*
                       
     bm04789   275 Q    275  

SM00320: domain 3 of 4, from 341 to 380: score 3.4, E = 1.5e+02
                   *->t.kllrtlk.gHtgespVtsvafspdggssdspnllasgs.Dgtirl
                      +  +lrt + gH+    V+++++s +g      ++l  g   g++ +
     bm04789   341    NfLPLRTKScGHEV---VSCLDVSESG------TFLGLGTvTGSVAI 378  

                   Wd<-*
                   +    
     bm04789   379 YI    380  

SM00320: domain 4 of 4, from 383 to 434: score 2.3, E = 2.1e+02
                   *->t.kllrtlk.gHtgespVtsvafspdggss.....dspnllasgs.D
                      + ++l+  +++H     Vt+vaf p  g +++  +++++ l+s   D
     bm04789   383    SlQCLYYVReAHGI--VVTDVAFLPEKGRGpellgSHETALFSVAvD 427  

                   gtirlWd<-*
                   + + l     
     bm04789   428 SRCQLHL    434  

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