hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00441488/chunk_1/iprscan-20090618-00441488.nocrc
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Query sequence: bm04850
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF04389.7.fs  Peptidase family M28                       59.5    1.5e-17   1
PF04389.7.ls  Peptidase family M28                       59.0    1.5e-14   1
PF01546.18.fs Peptidase family M20/M25/M40               16.4    0.00019   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF04389.7.fs    1/1     291   369 ..     1   102 [.    59.5  1.5e-17
PF04389.7.ls    1/1     291   457 ..     1   225 []    59.0  1.5e-14
PF01546.18.fs   1/1     307   351 ..    61   126 ..    16.4  0.00019

Alignments of top-scoring domains:
PF04389.7.fs: domain 1 of 1, from 291 to 369: score 59.5, E = 1.5e-17
                   *->eylllgAHyDSvpvgkdapgdsgeigpGAtDnAsGvAalLElARvLa
                      +++l+++H+DS  ++         +g GA+D++ G+ + +E +  ++
     bm04850   291    QVVLVSGHLDS--WD---------VGQGAMDDGGGAFISWEALSLIK 326  

                   aqqgpqpekrsvvFlffgAEEAfeeWpdGLlGShafaekWelPphkplkk
                     +g +p kr++++++++AEE      +G +G+  + +   l +++ +++
     bm04850   327 D-LGLRP-KRTLRLVLWTAEE------QGGVGAFQYYQ---L-HKVNISN 364  

                   iravi<-*
                     +v+   
     bm04850   365 YSLVM    369  

PF04389.7.ls: domain 1 of 1, from 291 to 457: score 59.0, E = 1.5e-14
                   *->eylllgAHyDSvpvgkdapgdsgeigpGAtDnAsGvAalLElARvLa
                      +++l+++H+DS  ++         +g GA+D++ G+ + +E +  ++
     bm04850   291    QVVLVSGHLDS--WD---------VGQGAMDDGGGAFISWEALSLIK 326  

                   aqqgpqpekrsvvFlffgAEEAfeeWpdGLlGShafaekWelPphkplkk
                     +g +p kr++++++++AEE      +G +G+  + +   l +++ +++
     bm04850   327 D-LGLRP-KRTLRLVLWTAEE------QGGVGAFQYYQ---L-HKVNISN 364  

                   iraviNLDmiGsggpallfqdggTanafgnlpsIErLll.l.lleayles
                     +v+  D+      +l f+++                  +  +e++ + 
     bm04850   365 YSLVMESDAGTFLPTGLQFTGSE---------------KaRaIMEEVMSL 399  

                   aahpygttlgldvfqegggpgrsDhapFlndkaGvPgLdfaagp.nkdgq
                             l+++q+   + ++D   ++  +aGvPg  + ++       
     bm04850   400 L-------QPLNITQVLSHGEGTDINFWI--QAGVPGASLLDDLyK---- 436  

                   aagggtagdafgpvYHTpaDtldnidldtlq<-*
                             + + +H+ +Dt+   d+  +    
     bm04850   437 ----------YFFFHHSHGDTMTVMDPKQMN    457  

PF01546.18.fs: domain 1 of 1, from 307 to 351: score 16.4, E = 0.00019
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->GhdDhkggllaalealaalkaaggklkgtvkllfqpdEEgggfglaa
                      G+ D+ gg     eal  +k+ g ++k+t++l+ +++EE gg     
     bm04850   307    GAMDDGGGAFISWEALSLIKDLGLRPKRTLRLVLWTAEEQGGV---- 349  

                RF xxxxxxxxxxxxxxxxxxx   
                   llgskeaglgkadveliGa<-*
                                    Ga   
     bm04850   350 -----------------GA    351  

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