hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090416/iprscan-20090416-11514896/chunk_1/iprscan-20090416-11514896.nocrc
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Query sequence: bm04855
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model           Description                             Score    E-value  N 
--------        -----------                             -----    ------- ---
PF01066.11.ls   CDP-alcohol phosphatidyltransferase     125.9    1.1e-34   1
PF01066.11.fs   CDP-alcohol phosphatidyltransferase     124.0    2.2e-34   1

Parsed for domains:
Model           Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------        ------- ----- -----    ----- -----      -----  -------
PF01066.11.fs     1/1     111   271 ..     1   165 []   124.0  2.2e-34
PF01066.11.ls     1/1     111   271 ..     1   165 []   125.9  1.1e-34

Alignments of top-scoring domains:
PF01066.11.fs: domain 1 of 1, from 111 to 271: score 124.0, E = 2.2e-34
                   *->lllfllaallDalDGylARklgnqvSrfGafLDplaDkisdglalva
                      + ++ll++llDa+DG++AR l nq++rfGa+LD+l+D++s+ ++lv 
     bm04855   111    SSFYLLSGLLDAFDGHAARAL-NQGTRFGAMLDMLTDRCSTMCLLVN 156  

                   layayp...vslpgwltldllllilarfillsalrlaranvgvvgl....
                   la++yp+ + +++  + ld+++++l+++++++ ++++++ +  +g++  +
     bm04855   157 LALLYPgatLFFQISMSLDVASHWLHLHSSVVRGSESHKMIDLSGNpvlr 206  

                   .....aaflggkiktgeqflailllllfgigppnsklsylilenwllalg
                      ++++ l++ + ++e+f+++l+l+ f  gp       l+ ++ l++ g
     bm04855   207 iyytsRPALFTLCAGNELFYCLLYLFHFSEGP-------LVGSVGLFRMG 249  

                   lvilallfilqmgviaailtlisvveylla<-*
                   l+++a+        ia++++lisv++++ a   
     bm04855   250 LWVTAP--------IALLKSLISVIHLITA    271  

PF01066.11.ls: domain 1 of 1, from 111 to 271: score 125.9, E = 1.1e-34
                   *->lllfllaallDalDGylARklgnqvSrfGafLDplaDkisdglalva
                      + ++ll++llDa+DG++AR l nq++rfGa+LD+l+D++s+ ++lv 
     bm04855   111    SSFYLLSGLLDAFDGHAARAL-NQGTRFGAMLDMLTDRCSTMCLLVN 156  

                   layayp...vslpgwltldllllilarfillsalrlaranvgvvgl....
                   la++yp+ + +++  + ld+++++l+++++++ ++++++ +  +g++  +
     bm04855   157 LALLYPgatLFFQISMSLDVASHWLHLHSSVVRGSESHKMIDLSGNpvlr 206  

                   .....aaflggkiktgeqflailllllfgigppnsklsylilenwllalg
                      ++++ l++ + ++e+f+++l+l+ f  gp       l+ ++ l++ g
     bm04855   207 iyytsRPALFTLCAGNELFYCLLYLFHFSEGP-------LVGSVGLFRMG 249  

                   lvilallfilqmgviaailtlisvveylla<-*
                   l+++a+        ia++++lisv++++ a   
     bm04855   250 LWVTAP--------IALLKSLISVIHLITA    271  

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