hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-21521154/chunk_1/iprscan-20080807-21521154.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm04873
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02173.8.fs pKID domain                                     84.3    4.1e-25   1
PF02173.8.ls pKID domain                                     86.3    8.8e-23   1
PF00170.11.fs bZIP transcription factor                       80.9    2.5e-22   1
PF00170.11.ls bZIP transcription factor                       82.8      1e-21   1
PF07716.5.ls Basic region leucine zipper                     26.6    8.4e-05   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02173.8.ls   1/1     113   153 ..     1    42 []    86.3  8.8e-23
PF02173.8.fs   1/1     113   153 ..     1    42 []    84.3  4.1e-25
PF00170.11.fs   1/1     281   341 .]     1    65 []    80.9  2.5e-22
PF07716.5.ls   1/1     281   335 ..     1    57 []    26.6  8.4e-05
PF00170.11.ls   1/1     281   341 .]     1    65 []    82.8    1e-21

Alignments of top-scoring domains:
PF02173.8.ls: domain 1 of 1, from 113 to 153: score 86.3, E = 8.8e-23
                   *->essdsdessPqkRREILaRRPSYRKILnDLsgddpvdpkgee<-*
                      es+ds+++s qkRREIL+RRPSYRKILnDLs+d+p+ p++ee   
     bm04873   113    ESVDSVTDS-QKRREILSRRPSYRKILNDLSSDAPGVPRIEE    153  

PF02173.8.fs: domain 1 of 1, from 113 to 153: score 84.3, E = 4.1e-25
                   *->essdsdessPqkRREILaRRPSYRKILnDLsgddpvdpkgee<-*
                      es+ds+++s qkRREIL+RRPSYRKILnDLs+d+p+ p++ee   
     bm04873   113    ESVDSVTDS-QKRREILSRRPSYRKILNDLSSDAPGVPRIEE    153  

PF00170.11.fs: domain 1 of 1, from 281 to 341: score 80.9, E = 2.5e-22
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
                      e+++Kre R++kNReAAr++R++K++++++Le++v++Le++Nk+L++
     bm04873   281    EAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIE 327  

                   elerLkkevakLksenee<-*
                   el+ Lk++++    ++++   
     bm04873   328 ELKALKDLYC----HKSD    341  

PF07716.5.ls: domain 1 of 1, from 281 to 335: score 26.6, E = 8.4e-05
                   *->kddeyrdrRrlrNneAAkrsReKkKqreeeleervkeLeeeNaqLLk
                      + + +r+ R ++N+eAA+ +R KkK++ + le+rv  Le +N +L  
     bm04873   281    EAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTL-- 325  

                   rqkveqLekE<-*
                    +++++L++    
     bm04873   326 IEELKALKDL    335  

PF00170.11.ls: domain 1 of 1, from 281 to 341: score 82.8, E = 1e-21
                   *->ekelKrerRkqkNReAArrsRlRKqaeieeLeekveeLeaeNkaLrk
                      e+++Kre R++kNReAAr++R++K++++++Le++v++Le++Nk+L++
     bm04873   281    EAARKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKTLIE 327  

                   elerLkkevakLksenee<-*
                   el+ Lk++++    ++++   
     bm04873   328 ELKALKDLYC----HKSD    341  

//