hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-22045412/chunk_1/iprscan-20080807-22045412.nocrc
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Query sequence: bm04918
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00079.10.fs Serpin (serine protease inhibitor)             468.2   4.2e-141   1
PF00079.10.ls Serpin (serine protease inhibitor)             470.1   2.6e-138   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04886.3.fs   1/1      96   131 ..     1    36 []    17.2  0.00031
PF04886.3.ls   1/1      96   131 ..     1    36 []    19.2    0.004
PF00079.10.fs   1/1     150   513 ..     1   397 []   468.2 4.2e-141
PF00079.10.ls   1/1     150   513 ..     1   397 []   470.1 2.6e-138

Alignments of top-scoring domains:
PF04886.3.fs: domain 1 of 1, from 96 to 131: score 17.2, E = 0.00031
                   *->qPTaqPTaqPTvqPTgqPtaqPTdqPtaqPtdaPta<-*
                       +T++PT+qPT++PT qPt qPT++ t  Ptd Pt+   
     bm04918    96    NTTDEPTTQPTTEPTTQPTIQPTQPTTQLPTDSPTQ    131  

PF04886.3.ls: domain 1 of 1, from 96 to 131: score 19.2, E = 0.004
                   *->qPTaqPTaqPTvqPTgqPtaqPTdqPtaqPtdaPta<-*
                       +T++PT+qPT++PT qPt qPT++ t  Ptd Pt+   
     bm04918    96    NTTDEPTTQPTTEPTTQPTIQPTQPTTQLPTDSPTQ    131  

PF00079.10.fs: domain 1 of 1, from 150 to 513: score 468.2, E = 4.2e-141
                   *->ldsralkLasantdFAfsLYkqLveskspdkNiffSPvSIssALAml
                      ++s+++ L++a++dF+++LY++++++k++ +N+ fSP+SI+s L+++
     bm04918   150    SHSTEAVLGDALVDFSLKLYHAFSAMKKVETNMAFSPFSIASLLTQV 196  

                   sLGAkgnTrtQilegLgFnltetseaeyadhklaihqgFqhLlqelnrpd
                    LGA+ nT+t++ ++L+++++ t+          +hq+++ +++++    
     bm04918   197 LLGAGENTKTNLESILSYPKDFTC----------VHQALKGFTTKG---- 232  

                   kelqlttgnaLFvdkslkLldeFledvkklYqaevfsvDFsdapeeAkkq
                       +t+++++F++++l ++d+F++ +++lY +  + +  ++  ++ +++
     bm04918   233 ----VTSVSQIFHSPDLAIRDTFVNASRTLYSSSPRVLSNNS--DANLEL 276  

                   INdwVekqTqGKIkdLlsdgsLDsdTvlvLVNyIyFKGkWkkpFdpenTr
                   IN+wV+k T++KI +Ll++  L+sdT+lvL+N+Iy  +kWk+ Fdp++Tr
     bm04918   277 INTWVAKNTNNKISRLLDS--LPSDTRLVLLNAIYLSAKWKTTFDPKKTR 324  

                   eedFhvdkkttVkVPMMksqlgtfryTeyfrdeeLsckVleLpYkgnata
                   +e+Fh  k++++kVPMM+s+++++    +f d++L++kV +L +++n ++
     bm04918   325 MEPFHF-KNSVIKVPMMNSKKYPVA---HFIDQTLKAKVGQLQLSHN-LS 369  

                   mfiLlP.pdegkLeqvEaaLtpetlrkWt.lknmtkrsv.eLyLPKFsIe
                   ++iL+P++ +++Le +E+aL+p++++ ++++ +m+k++ + L+LP++++ 
     bm04918   370 LVILVPqNLKHRLEDMEQALSPSVFKAIMeKLEMSKFQPtLLTLPRIKVT 419  

                   gtydLksvLakLGItdlFseskADLsgisededLkVSkavHKAvLevdEe
                   ++ d+ s+++kL+  d  ++   +L+g++ed dL+VS ++H+ vLe++E+
     bm04918   420 TSQDMLSIMEKLEFFDFSYD--LNLCGLTEDPDLQVSAMQHQTVLELTET 467  

                   GtEAaAATaaeivprsslppelevefkfdRPFLFlIrenpTgsiLFmGkV
                   G+EAaAA a+ ++++  l+      f++ +PFLF+++++++++++FmG+V
     bm04918   468 GVEAAAASAISVART-LLV------FEVQQPFLFMLWDQQHKFPVFMGRV 510  

                   vnP<-*
                   ++P   
     bm04918   511 YDP    513  

PF00079.10.ls: domain 1 of 1, from 150 to 513: score 470.1, E = 2.6e-138
                   *->ldsralkLasantdFAfsLYkqLveskspdkNiffSPvSIssALAml
                      ++s+++ L++a++dF+++LY++++++k++ +N+ fSP+SI+s L+++
     bm04918   150    SHSTEAVLGDALVDFSLKLYHAFSAMKKVETNMAFSPFSIASLLTQV 196  

                   sLGAkgnTrtQilegLgFnltetseaeyadhklaihqgFqhLlqelnrpd
                    LGA+ nT+t++ ++L+++++ t+          +hq+++ +++++    
     bm04918   197 LLGAGENTKTNLESILSYPKDFTC----------VHQALKGFTTKG---- 232  

                   kelqlttgnaLFvdkslkLldeFledvkklYqaevfsvDFsdapeeAkkq
                       +t+++++F++++l ++d+F++ +++lY +  + +  ++  ++ +++
     bm04918   233 ----VTSVSQIFHSPDLAIRDTFVNASRTLYSSSPRVLSNNS--DANLEL 276  

                   INdwVekqTqGKIkdLlsdgsLDsdTvlvLVNyIyFKGkWkkpFdpenTr
                   IN+wV+k T++KI +Ll++  L+sdT+lvL+N+Iy  +kWk+ Fdp++Tr
     bm04918   277 INTWVAKNTNNKISRLLDS--LPSDTRLVLLNAIYLSAKWKTTFDPKKTR 324  

                   eedFhvdkkttVkVPMMksqlgtfryTeyfrdeeLsckVleLpYkgnata
                   +e+Fh  k++++kVPMM+s+++++    +f d++L++kV +L +++n ++
     bm04918   325 MEPFHF-KNSVIKVPMMNSKKYPVA---HFIDQTLKAKVGQLQLSHN-LS 369  

                   mfiLlP.pdegkLeqvEaaLtpetlrkWt.lknmtkrsv.eLyLPKFsIe
                   ++iL+P++ +++Le +E+aL+p++++ ++++ +m+k++ + L+LP++++ 
     bm04918   370 LVILVPqNLKHRLEDMEQALSPSVFKAIMeKLEMSKFQPtLLTLPRIKVT 419  

                   gtydLksvLakLGItdlFseskADLsgisededLkVSkavHKAvLevdEe
                   ++ d+ s+++kL+  d  ++   +L+g++ed dL+VS ++H+ vLe++E+
     bm04918   420 TSQDMLSIMEKLEFFDFSYD--LNLCGLTEDPDLQVSAMQHQTVLELTET 467  

                   GtEAaAATaaeivprsslppelevefkfdRPFLFlIrenpTgsiLFmGkV
                   G+EAaAA a+ ++++  l+      f++ +PFLF+++++++++++FmG+V
     bm04918   468 GVEAAAASAISVART-LLV------FEVQQPFLFMLWDQQHKFPVFMGRV 510  

                   vnP<-*
                   ++P   
     bm04918   511 YDP    513  

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