hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-22110848/chunk_1/iprscan-20080807-22110848.nocrc
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Query sequence: bm04925
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01399.17.fs PCI domain                                      70.4    4.8e-19   1
PF01399.17.ls PCI domain                                      72.1    1.6e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01399.17.fs   1/1      82   177 ..     1   135 []    70.4  4.8e-19
PF01399.17.ls   1/1      82   177 ..     1   135 []    72.1  1.6e-18

Alignments of top-scoring domains:
PF01399.17.fs: domain 1 of 1, from 82 to 177: score 70.4, E = 4.8e-19
                   *->payrdLleafysgdlsdfeeiladhvmAKalkGwqkkeellldpgla
                       + ++Ll +f++g+++d+  + + +                     +
     bm04925    82    ASTFRLLTVFAYGTYADYLAEARNL---------------------P 107  

                   ekvwlegdkhledLrrkirelnlrrlakftysapYssislsdlakllgls
                   +        + e +++k+r+l++++la      + ++i+++ l ++l l 
     bm04925   108 P--------LTEAQKNKLRHLSVVTLAA-----KVKCIPYAVLLEALALR 144  

                   vvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-*
                   +v      ++E +++++++++ +rg++Dq n+ ++v+    
     bm04925   145 NV-----RQLEDLVIEAVYADVLRGSLDQRNQRLEVDY    177  

PF01399.17.ls: domain 1 of 1, from 82 to 177: score 72.1, E = 1.6e-18
                   *->payrdLleafysgdlsdfeeiladhvmAKalkGwqkkeellldpgla
                       + ++Ll +f++g+++d+  + + +                     +
     bm04925    82    ASTFRLLTVFAYGTYADYLAEARNL---------------------P 107  

                   ekvwlegdkhledLrrkirelnlrrlakftysapYssislsdlakllgls
                   +        + e +++k+r+l++++la      + ++i+++ l ++l l 
     bm04925   108 P--------LTEAQKNKLRHLSVVTLAA-----KVKCIPYAVLLEALALR 144  

                   vvedvlqdevEkilsklIrdglirgkIDqvngivvvse<-*
                   +v      ++E +++++++++ +rg++Dq n+ ++v+    
     bm04925   145 NV-----RQLEDLVIEAVYADVLRGSLDQRNQRLEVDY    177  

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