hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-22110848/chunk_1/iprscan-20080807-22110848.nocrc
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Query sequence: bm04925
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00088                                                  73.3    3.1e-17   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00088    1/1     108   198 ..     1    92 []    73.3  3.1e-17

Alignments of top-scoring domains:
SM00088: domain 1 of 1, from 108 to 198: score 73.3, E = 3.1e-17
                   *->qhverLqrkiretnllqlsepYPssislsdlakllglsvpeevEklv
                      +++e++ +k+r++   +l+    ++i++  l ++l l++ +++E+lv
     bm04925   108    PLTEAQKNKLRHLSVVTLAAKV-KCIPYAVLLEALALRNVRQLEDLV 153  

                   skaIrdgeisakIDqvngivefeevdpryltsnqlaqlaerlkkl<-*
                   ++a++++ +++++Dq+n+++e++ + +r+++++ l ++a +l+++   
     bm04925   154 IEAVYADVLRGSLDQRNQRLEVDYSIGRDIQRQDLSAIARTLQEW    198  

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