hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-22164423/chunk_1/iprscan-20080807-22164423.nocrc
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Query sequence: bm04933
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF01061.14.ls ABC-2 type transporter                    189.3    8.5e-54   1
PF01061.14.fs ABC-2 type transporter                    187.4    3.2e-53   1
PF00005.17.fs ABC transporter                           126.2    8.7e-35   1
PF00005.17.ls ABC transporter                           124.9      2e-34   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00005.17.fs   1/1      85   270 ..     5   224 .]   126.2  8.7e-35
PF00005.17.ls   1/1      85   270 ..     1   224 []   124.9    2e-34
PF01061.14.fs   1/1     383   594 ..     1   246 []   187.4  3.2e-53
PF01061.14.ls   1/1     383   594 ..     1   246 []   189.3  8.5e-54

Alignments of top-scoring domains:
PF00005.17.fs: domain 1 of 1, from 85 to 270: score 126.2, E = 8.7e-35
                RF    xxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxx
                   *->alvGpNGaGKSTLLkllsGllsyPt.rAeGeilldgepkelgrdltd
                      a++Gp G GKS+LL +l+   + P+++ +G++l++         ++ 
     bm04933    85    AILGPTGGGKSSLLDVLAARKD-PSgL-SGDVLIN---------GAP 120  

                RF xxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   lss.rererlrkrigyvfQdpnlfldprlTvrenlayglpdkkaggkere
                    +++ ++       gyv Qd   +   +lTvrenl ++           +
     bm04933   121 RPAnFKCN-----SGYVVQDDVVM--GTLTVRENLQFS-----------A 152  

                RF xxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   allrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlgerpgtL
                   al++ + ++  e ++r+  ++ ++Gl++ ad+        +v+ +++++ 
     bm04933   153 ALRLATTMtNHEKNERINRVIQELGLDKVADS--------KVGTQFIRGV 194  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   SGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelrgeqg
                   SGG+++R +i + l+t+p +L+LDEPT+gLD  +  ++l ll++   +qg
     bm04933   195 SGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMS-KQG 243  

                RF xxxxxxxxxxxx xxxxxxxxxxxxxx   
                   itvllitHdldl.ldrladrilvlenG<-*
                   +t+++  H+++ ++++l+d +  l+ G   
     bm04933   244 RTIIFSIHQPRYsIFKLFDSLTLLASG    270  

PF00005.17.ls: domain 1 of 1, from 85 to 270: score 124.9, E = 2e-34
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxx
                   *->GevlalvGpNGaGKSTLLkllsGllsyPt.rAeGeilldgepkelgr
                          a++Gp G GKS+LL +l+   + P+++ +G++l++        
     bm04933    85    ----AILGPTGGGKSSLLDVLAARKD-PSgL-SGDVLIN-------- 117  

                RF xxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   dltdlss.rererlrkrigyvfQdpnlfldprlTvrenlayglpdkkagg
                    ++  +++ ++       gyv Qd   +   +lTvrenl ++        
     bm04933   118 -GAPRPAnFKCN-----SGYVVQDDVVM--GTLTVRENLQFS-------- 151  

                RF xxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   kereallrllgl.eeeadaraeeaLervGlpdladrsnLpqgydtvlger
                      +al++ + ++  e ++r+  ++ ++Gl++ ad+        +v+ ++
     bm04933   152 ---AALRLATTMtNHEKNERINRVIQELGLDKVADS--------KVGTQF 190  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   pgtLSGGqkQRvaiARalltkpklLlLDEPTagLDpasraqllellrelr
                   +++ SGG+++R +i + l+t+p +L+LDEPT+gLD  +  ++l ll++  
     bm04933   191 IRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMS 240  

                RF xxxxxxxxxxxxxxxx xxxxxxxxxxxxxx   
                   geqgitvllitHdldl.ldrladrilvlenG<-*
                    +qg+t+++  H+++ ++++l+d +  l+ G   
     bm04933   241 -KQGRTIIFSIHQPRYsIFKLFDSLTLLASG    270  

PF01061.14.fs: domain 1 of 1, from 383 to 594: score 187.4, E = 3.2e-53
                   *->tqlkallkReflrrwRdpslgllwrliqpllmalvfGtvFgnlfkar
                      +ql+++ kR+f++++++p++  ++++i +++++lv+G ++++     
     bm04933   383    HQLRWVSKRSFKNLLGNPQAS-IAQIIVTVVLGLVIGAIYFG----- 423  

                   lgVmrndqtapqsgglgnrfgpsyidflvpGllffsllfnafsslsgisp
                   l+   n  +  ++g++ nr           G+lff++++ +fss+s++  
     bm04933   424 LK---N--D--STGIQ-NR----------AGVLFFLTTNQCFSSVSAV-E 454  

                   vfirergvlEyrelasplYspsayvlakilve.lpisllqaiifllivyf
                   +f++e+ ++ ++e+ s++Y++s+y+l+k l++ lp+ +l +iif+ ivyf
     bm04933   455 LFVVEKKLF-IHEYISGYYRVSSYFLGKLLSDlLPMRMLPSIIFTCIVYF 503  

                   mvGlrpsagrFggslgslflfllvllltalaasslglfiaalapsfedas
                   m+Gl p a++F       f ++++l+++a  ass++l+iaa    + +a+
     bm04933   504 MLGLKPKADAF-------FVMMFTLMMVAYSASSMALAIAAGQSVVSVAT 546  

                   qigpllllplllfsGffiPldsmPpfewlqwiyylnPltYaiealranef
                   +++++ ++++++fsG +++l ++  + wl w+ y++  +Y++ al+ nef
     bm04933   547 LLMTICFVFMMIFSGLLVNLTTI-AS-WLSWLQYFSIPRYGFTALQHNEF 594  

                   <-*
                      
     bm04933     -     -    

PF01061.14.ls: domain 1 of 1, from 383 to 594: score 189.3, E = 8.5e-54
                   *->tqlkallkReflrrwRdpslgllwrliqpllmalvfGtvFgnlfkar
                      +ql+++ kR+f++++++p++  ++++i +++++lv+G ++++     
     bm04933   383    HQLRWVSKRSFKNLLGNPQAS-IAQIIVTVVLGLVIGAIYFG----- 423  

                   lgVmrndqtapqsgglgnrfgpsyidflvpGllffsllfnafsslsgisp
                   l+   n  +  ++g++ nr           G+lff++++ +fss+s++  
     bm04933   424 LK---N--D--STGIQ-NR----------AGVLFFLTTNQCFSSVSAV-E 454  

                   vfirergvlEyrelasplYspsayvlakilve.lpisllqaiifllivyf
                   +f++e+ ++ ++e+ s++Y++s+y+l+k l++ lp+ +l +iif+ ivyf
     bm04933   455 LFVVEKKLF-IHEYISGYYRVSSYFLGKLLSDlLPMRMLPSIIFTCIVYF 503  

                   mvGlrpsagrFggslgslflfllvllltalaasslglfiaalapsfedas
                   m+Gl p a++F       f ++++l+++a  ass++l+iaa    + +a+
     bm04933   504 MLGLKPKADAF-------FVMMFTLMMVAYSASSMALAIAAGQSVVSVAT 546  

                   qigpllllplllfsGffiPldsmPpfewlqwiyylnPltYaiealranef
                   +++++ ++++++fsG +++l ++  + wl w+ y++  +Y++ al+ nef
     bm04933   547 LLMTICFVFMMIFSGLLVNLTTI-AS-WLSWLQYFSIPRYGFTALQHNEF 594  

                   <-*
                      
     bm04933     -     -    

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