hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00504177/chunk_1/iprscan-20090618-00504177.nocrc
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Query sequence: bm04965
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00220                                                 283.6    1.5e-80   1
SM00219                                                 -49.0    4.2e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00219    1/1     190   506 ..     1   280 []   -49.0  4.2e-08
SM00220    1/1     190   506 ..     1   231 []   283.6  1.5e-80

Alignments of top-scoring domains:
SM00219: domain 1 of 1, from 190 to 506: score -49.0, E = 4.2e-08
                   *->ltlgkkLGeGaFGeVykGtlk....ieVAVKtLkeda..keeFlrEa
                       +  ++LGeGaFG+V++++  + +++ VAVK +k+  +  e+ ++E+
     bm04965   190    YEIVDTLGEGAFGKVVECIDHkaggRHVAVKIVKNVDryCEAARSEI 236  

                   kiMkklGgkH..pN....iVkLlGvcteegrrFmevePlmivmEymegGd
                   +++ +l  + ++pN++ + V++l    ++       + ++iv+E+  + +
     bm04965   237 QVLEHL--NTtdPNstfrCVQMLEWFEHH-------GHICIVFELLGL-S 276  

                   LldyLrknrpk.lslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcL.v
                     d++++n+  ++ l++  ++A+QI+k  ++L+s+++ H DL   N+L v
     bm04965   277 TYDFIKENGFLpFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILfV 326  

                   genk..................vvKIsDFGLsRdlyddDkkGeskdyYrk
                    +++++  +++ ++++++  ++ +K+ DFG + + +++      +++ ++
     bm04965   327 QSDYteaynpkikrdertlinpDIKVVDFGSATYDDEH------HSTLVS 370  

                   kggkggktllPirWmAPEslkdgkFtskSDVWSFGVlLWEiftlGeqPYp
                   +   + +        APE++     +   DVWS G  L        + Y 
     bm04965   371 TR--HYR--------APEVILALGWSQPCDVWSIGCIL-------IEYYL 403  

                   geiqqfmsneevleylkkGyRlpkPendl.p.iS................
                   g      + +  +   ++  ++++   +l+ ++ +++++++  ++++ + 
     bm04965   404 G-----FTVFPTHDSKEHLAMMERILGPLpKhMIqktrkrkyfhhdrldw 448  

                   ...................s.....vtCPdelYdlMlqCWaedPedRPtF
                   +++++ ++  +++ ++ +++  +++v+ ++ l+dl+++  ++dP++R t 
     bm04965   449 dehssagryvsrrckplkeFmlsqdVE-HERLFDLIQKMLEYDPAKRITL 497  

                   sel..verl<-*
                   +e  ++ ++   
     bm04965   498 REAlkHPFF    506  

SM00220: domain 1 of 1, from 190 to 506: score 283.6, E = 1.5e-80
                   *->YellkklGkGaFGkVylardkk.tgrlvAiKvik......erilrEi
                      Ye++++lG+GaFGkV  ++d+k  gr+vA+K++k+ ++  e +++Ei
     bm04965   190    YEIVDTLGEGAFGKVVECIDHKaGGRHVAVKIVKnvdrycEAARSEI 236  

                   kiLkk.......dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkk
                   ++L++ ++++++     V+++++fe+++++++V+E+++    + +d++k+
     bm04965   237 QVLEHlnttdpnSTFRCVQMLEWFEHhGHICIVFELLGL---STYDFIKE 283  

                   rgrrglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..
                   +g      ++  +++r++++Qi++ +++LHs++  H DLKPeNiL+ +++
     bm04965   284 NGF----LPFRLdHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQsd 329  

                   ...................hvKlaDFGlArql....ttfvGTpeYmAPEv
                    ++  +++ ++++++  ++ +K+ DFG+A+  +++++t+v T++Y+APEv
     bm04965   330 yteaynpkikrdertlinpDIKVVDFGSATYDdehhSTLVSTRHYRAPEV 379  

                   l...gYgkpavDiWSlGcilyElltGkpPFp.....qldlifkkig....
                   +   g++  ++D+WS+Gcil+E + G + Fp+++++++ +++++i+++ +
     bm04965   380 IlalGWSQ-PCDVWSIGCILIEYYLGFTVFPthdskEHLAMMERILgplp 428  

                   ...............................................Spe
                   ++   +++++++ ++++ +++++++ +++ +++ ++ ++   + + + + 
     bm04965   429 khmiqktrkrkyfhhdrldwdehssagryvsrrckplkefmlsqdveHER 478  

                   akdLikklLvkdPekRlta.eaLedeldikaHPff<-*
                   + dLi+k+L++dP+kR+t +eaL+       HPff   
     bm04965   479 LFDLIQKMLEYDPAKRITLrEALK-------HPFF    506  

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