hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-22344943/chunk_1/iprscan-20080807-22344943.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05002
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF07002.6.ls Copine                                         313.8    2.9e-91   1
PF07002.6.fs Copine                                         311.9    1.1e-90   1
PF00168.20.fs C2 domain                                       96.5    3.9e-28   2
PF00168.20.ls C2 domain                                       87.2    4.7e-23   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00168.20.fs   1/2      11   102 ..     1    88 []    47.9  1.1e-13
PF00168.20.ls   1/2      11   102 ..     1    88 []    49.9  7.9e-12
PF00168.20.ls   2/2     118   208 ..     1    88 []    37.3    5e-08
PF00168.20.fs   2/2     132   208 ..    14    88 .]    48.5    7e-14
PF07002.6.fs   1/1     284   431 ..     1   160 []   311.9  1.1e-90
PF07002.6.ls   1/1     284   431 ..     1   160 []   313.8  2.9e-91

Alignments of top-scoring domains:
PF00168.20.fs: domain 1 of 2, from 11 to 102: score 47.9, E = 1.1e-13
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk...kkTkvik
                      L+   i++ +L+ kD +++ksDP +++  +  ++ ++ +  +T+ ++
     bm05002    11    LVQLSISCDHLIDKD-IGSKSDPLCVLLQDVGGG-SWaelGRTERVR 55   

                   ktlNPvWNEtFtFevpppdlqetLeieVyDydrfgr....ddflGevs<-
                   ++++P++  t+++e  ++++q+ L++ +yD d ++ + ++ddflG ++  
     bm05002    56 NCSSPEFSKTLQLEYRFETVQK-LRFGIYDIDNKTPelrdDDFLGGAE   102  

                   *
                    
     bm05002     -   -    

PF00168.20.ls: domain 1 of 2, from 11 to 102: score 49.9, E = 7.9e-12
                   *->LrVtvieAknLppkDkkngksDPYVkvylggdkkdqk...kkTkvik
                      L+   i++ +L+ kD +++ksDP +++  +  ++ ++ +  +T+ ++
     bm05002    11    LVQLSISCDHLIDKD-IGSKSDPLCVLLQDVGGG-SWaelGRTERVR 55   

                   ktlNPvWNEtFtFevpppdlqetLeieVyDydrfgr....ddflGevs<-
                   ++++P++  t+++e  ++++q+ L++ +yD d ++ + ++ddflG ++  
     bm05002    56 NCSSPEFSKTLQLEYRFETVQK-LRFGIYDIDNKTPelrdDDFLGGAE   102  

                   *
                    
     bm05002     -   -    

PF00168.20.ls: domain 2 of 2, from 118 to 208: score 37.3, E = 5e-08
                   *->LrVtvie..AknLppkDkkngksDPYVkvylggdkkd.qkkkTkvik
                      L ++  ++ +++ +  D + gksDP+ +++  gd+k + +++++vik
     bm05002   118    LMLKPGKpaGRGTIT-D-FLGKSDPFLEFFRQGDGKWhLVYRSEVIK 162  

                   ktlNPvWN.EtFtFevpppdlqe.tLeieVyDydrfgrddflGevs<-*
                   ++lNP+W + +  ++  +    ++++++++ Dyd++g++d++G+++   
     bm05002   163 NNLNPTWKrFSVPVQHFCGGNPStPIQVQCSDYDSDGSHDLIGTFH    208  

PF00168.20.fs: domain 2 of 2, from 132 to 208: score 48.5, E = 7e-14
                   *->kDkkngksDPYVkvylggdkkd.qkkkTkvikktlNPvWN.EtFtFe
                      +D + gksDP+ +++  gd+k + +++++vik++lNP+W + +  ++
     bm05002   132    TD-FLGKSDPFLEFFRQGDGKWhLVYRSEVIKNNLNPTWKrFSVPVQ 177  

                   vpppdlqe.tLeieVyDydrfgrddflGevs<-*
                     +    ++++++++ Dyd++g++d++G+++   
     bm05002   178 HFCGGNPStPIQVQCSDYDSDGSHDLIGTFH    208  

PF07002.6.fs: domain 1 of 1, from 284 to 431: score 311.9, E = 1.1e-90
                   *->SLHyIsprqpNpYeqAIravGeiLqdYDsDklfPAfGFGAklPpdys
                      SLHy+sp+ +N+Y++A+++vG++ qdYDsDklfPAfGFGA++Ppd++
     bm05002   284    SLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQ 330  

                   VsHdedvFpLnfnpedpeCnGleGVleaYrealpnvqLsGPTnFaPiIna
                   VsH+   F+Lnfnp++p+C+G++G++ aYr+alp+v+L+GPTnFaPiIn+
     bm05002   331 VSHE---FALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINH 377  

                   aariAeas.stqkggqYhVLlIiTDGqvTrsvDteGLSpDmkeTidAIVs
                   +ar+A+++  + +++qY+ Ll++TDG vT          D ++T++A+V+
     bm05002   378 VARFAAQAaHQGTASQYFMLLLLTDGAVT----------DVEATREAVVR 417  

                   ASdlPLSIIiVGVG<-*
                   AS+lP+S+IiVGVG   
     bm05002   418 ASNLPMSVIIVGVG    431  

PF07002.6.ls: domain 1 of 1, from 284 to 431: score 313.8, E = 2.9e-91
                   *->SLHyIsprqpNpYeqAIravGeiLqdYDsDklfPAfGFGAklPpdys
                      SLHy+sp+ +N+Y++A+++vG++ qdYDsDklfPAfGFGA++Ppd++
     bm05002   284    SLHYLSPTGVNEYLMALWSVGSVVQDYDSDKLFPAFGFGAQVPPDWQ 330  

                   VsHdedvFpLnfnpedpeCnGleGVleaYrealpnvqLsGPTnFaPiIna
                   VsH+   F+Lnfnp++p+C+G++G++ aYr+alp+v+L+GPTnFaPiIn+
     bm05002   331 VSHE---FALNFNPSNPYCAGIQGIVDAYRQALPQVRLYGPTNFAPIINH 377  

                   aariAeas.stqkggqYhVLlIiTDGqvTrsvDteGLSpDmkeTidAIVs
                   +ar+A+++  + +++qY+ Ll++TDG vT          D ++T++A+V+
     bm05002   378 VARFAAQAaHQGTASQYFMLLLLTDGAVT----------DVEATREAVVR 417  

                   ASdlPLSIIiVGVG<-*
                   AS+lP+S+IiVGVG   
     bm05002   418 ASNLPMSVIIVGVG    431  

//