hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-22344943/chunk_1/iprscan-20080807-22344943.nocrc
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Query sequence: bm05002
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00239                                                  76.1    4.3e-18   2
SM00327                                                  61.5    1.1e-13   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00239    1/2      10   117 ..     1    92 []    44.2  1.7e-08
SM00239    2/2     128   223 ..     1    92 []    31.9    9e-05
SM00327    1/1     263   465 ..     1   193 []    61.5  1.1e-13

Alignments of top-scoring domains:
SM00239: domain 1 of 2, from 10 to 117: score 44.2, E = 1.7e-08
                   *->tLtvkiisArnLp........DPYVkvs............kTkvvkk
                      tL    is+ +L++++ ++++DP +++ ++ ++++    ++T+ v++
     bm05002    10    TLVQLSISCDHLIdkdigsksDPLCVLLqdvgggswaelgRTERVRN 56   

                   tlsgfNPvWnEesetFeFevpp...s.LeieVyDk..........dfiGr
                   +    +P++     t+++e   ++ ++L++ +yD ++++++ +++df+G 
     bm05002    57 CS---SPEFSK---TLQLEYRFetvQkLRFGIYDIdnktpelrddDFLGG 100  

                   vtippnnahqhsadglihlsell.ggrh.kl<-*
                   ++++              l ++ +++  +     
     bm05002   101 AECS--------------LGQIVsSQVLtLP    117  

SM00239: domain 2 of 2, from 128 to 223: score 31.9, E = 9e-05
                   *->tLtvkiisArnLpDPYVkvs...........kTkvvkktlsgfNPvW
                      + t++ + ++   DP+ +++++++++ +   +++v+k++l   NP+W
     bm05002   128    RGTITDFLGKS--DPFLEFFrqgdgkwhlvyRSEVIKNNL---NPTW 169  

                   nEesetFeFevpp.......s.LeieVyDk......dfiGrvtippnnah
                         F ++v++  ++++++++++++ D+++++++d+iG++  +     
     bm05002   170 K----RFSVPVQHfcggnpsTpIQVQCSDYdsdgshDLIGTFHTS----- 210  

                   qhsadglihlsell.ggrh.kl<-*
                            l +l+  +   ++   
     bm05002   211 ---------LAQLQaVPAEfEC    223  

SM00327: domain 1 of 1, from 263 to 465: score 61.5, E = 1.1e-13
                   *->plDvvfllDgSgSmg...............gnrfekvkefv.klveq
                      + ++++ +D +gS g+++++++ +  ++++ n +  ++  v+++v++
     bm05002   263    QINFTVGVDFTGSNGdpsspdslhylsptgVNEYLMALWSVgSVVQD 309  

                   ld.gdrvglvqFss......dvrvefpln.......sqskdallealasl
                    d++  + + +F+ + +++ +v +ef ln +++++ +   + +++a ++ 
     bm05002   310 YDsDKLFPAFGFGAqvppdwQVSHEFALNfnpsnpyCAGIQGIVDAYRQA 359  

                   sykglkdyslgggTnlg.ALqyalenlfsesag.rrgagratkiSnvpkv
                    +    + +l+g+Tn+++ ++++++ +  +++ + +              
     bm05002   360 LP----QVRLYGPTNFApIINHVARFAAQAAHQgTASQ---------YFM 396  

                   liliTDGesndggddpedileaakelkrsgvkvfvigvgnade.elkeia
                   l+l+TDG  +    d e ++ea+ ++ +   +v+++gvg+ad++ +++++
     bm05002   397 LLLLTDGAVT----DVEATREAVVRASNLPMSVIIVGVGGADFeAMEQLD 442  

                   sep.gehvffdvsdvedlpslldllidlll<-*
                    +++++h++         + +++++++++    
     bm05002   443 ADGgPLHTRS-------GQAAARDIVQFVP    465  

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