hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-12004328/chunk_1/iprscan-20090525-12004328.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05049
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04300.4.fs F-box associated region                         70.1    5.6e-20   1
PF00646.23.fs F-box domain                                    41.1    6.8e-10   1
PF00646.23.ls F-box domain                                    43.1    8.6e-10   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00646.23.fs   1/1      31    79 ..     1    46 []    41.1  6.8e-10
PF00646.23.ls   1/1      31    79 ..     1    46 []    43.1  8.6e-10
PF04300.4.fs   1/1      95   150 ..     1    86 [.    70.1  5.6e-20

Alignments of top-scoring domains:
PF00646.23.fs: domain 1 of 1, from 31 to 79: score 41.1, E = 6.8e-10
                   *->fslldLPdellleIlsrLdpkd.llrlslVSkrwrslvdsl.lwk.k
                       ++ +LP+ +lle + ++++++ ll+++lV+  wr+l+d ++lwk+k
     bm05049    31    GNINELPENILLELFTHVPARQlLLNCRLVCSLWRDLIDLVtLWKrK 77   

                   ll<-*
                   +l   
     bm05049    78 CL    79   

PF00646.23.ls: domain 1 of 1, from 31 to 79: score 43.1, E = 8.6e-10
                   *->fslldLPdellleIlsrLdpkd.llrlslVSkrwrslvdsl.lwk.k
                       ++ +LP+ +lle + ++++++ ll+++lV+  wr+l+d ++lwk+k
     bm05049    31    GNINELPENILLELFTHVPARQlLLNCRLVCSLWRDLIDLVtLWKrK 77   

                   ll<-*
                   +l   
     bm05049    78 CL    79   

PF04300.4.fs: domain 1 of 1, from 95 to 150: score 70.1, E = 5.6e-20
                   *->WksfYelkplrRNLLrNPCgyGltHdvsPPErevsGirPdsDlPPQl
                      Wk+fY+l++l+RNLL NPC+                           
     bm05049    95    WKIFYFLRSLHRNLLHNPCA--------------------------- 114  

                   EPeedlsgWsdvd.hGGDgWkVEeLPgdsgtifPgdpkVk<-*
                     ee+++ Ws  d +GGD WkVE L  d + +fP   +V+   
     bm05049   115 --EEGFEFWS-LDvNGGDEWKVEDLSRDQRKEFP-NDQVR    150  

//