hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090618/iprscan-20090618-00565991/chunk_1/iprscan-20090618-00565991.nocrc
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Query sequence: bm05134
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00228                                                 160.0    2.4e-43   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00228    1/2      87   159 ..     1    80 []    84.5  1.2e-20
SM00228    2/2     227   299 ..     1    80 []    75.4  6.9e-18

Alignments of top-scoring domains:
SM00228: domain 1 of 2, from 87 to 159: score 84.5, E = 1.2e-20
                   *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV
                      +g+Gf + g++++ g ++  v+pGspA+kaG      L +GD+++eV
     bm05134    87    NGYGFHLHGekgklGQYIRLVEPGSPAEKAG------LLAGDRLVEV 127  

                   NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   NG ++ve  th+++v ++++a +      v+L+v+ ++   
     bm05134   128 NG-ENVEKETHQQVVSRIRAALN-----AVRLLVVDPE    159  

SM00228: domain 2 of 2, from 227 to 299: score 75.4, E = 6.9e-18
                   *->gglGfsivg.....gifvssvvpGspAakaGrkslglLkvGDvIleV
                       g+Gf++ ++++++g f+ sv p+spA+ +G      L++ D+I+eV
     bm05134   227    SGYGFNLHSdkskpGQFIRSVDPDSPAEASG------LRAQDRIVEV 267  

                   NGetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                   NG + +eg+ h ++v ++++ g+     + +L+v+ ++   
     bm05134   268 NG-VCMEGKQHGDVVSAIRAGGD-----ETKLLVVDRE    299  

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