# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm05143.fasta.nr -Q bm05143.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm05143, 159 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6823546 sequences Expectation_n fit: rho(ln(x))= 4.9071+/-0.000182; mu= 8.3544+/- 0.010 mean_var=66.1676+/-13.136, 0's: 35 Z-trim: 48 B-trim: 2837 in 1/65 Lambda= 0.157671 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|116488050|gb|ABJ98607.1| 40S ribosomal protein ( 161) 1011 237.9 4.3e-61 gi|50403752|sp|P62263|RS14_HUMAN 40S ribosomal pro ( 151) 991 233.3 9.6e-60 gi|61369149|gb|AAX43292.1| ribosomal protein S14 [ ( 152) 991 233.3 9.6e-60 gi|3097244|emb|CAA69615.1| ribosomal protein S14 [ ( 151) 988 232.6 1.5e-59 gi|133785|sp|P13471|RS14_RAT 40S ribosomal protein ( 151) 987 232.4 1.8e-59 gi|163658471|gb|ABY28375.1| ribosomal protein S14 ( 151) 987 232.4 1.8e-59 gi|37748505|gb|AAH59561.1| Ribosomal protein S14 [ ( 151) 987 232.4 1.8e-59 gi|74226871|dbj|BAE27080.1| unnamed protein produc ( 151) 985 231.9 2.5e-59 gi|15294039|gb|AAK95196.1|AF402822_1 40S ribosomal ( 151) 981 231.0 4.6e-59 gi|28189929|dbj|BAC56579.1| similar to ribosomal p ( 145) 956 225.3 2.3e-57 gi|119909180|ref|XP_584177.3| PREDICTED: hypotheti ( 191) 957 225.6 2.5e-57 gi|148672594|gb|EDL04541.1| mCG8804 [Mus musculus] ( 151) 950 224.0 6.2e-57 gi|124300813|dbj|BAF45902.1| ribosomal protein S14 ( 151) 949 223.8 7.2e-57 gi|63680339|ref|XP_619341.1| PREDICTED: similar to ( 151) 946 223.1 1.2e-56 gi|730633|sp|Q08699|RS14_PODCA 40S ribosomal prote ( 151) 925 218.3 3.2e-55 gi|47935073|gb|AAT39883.1| ribosomal protein S14 [ ( 151) 904 213.5 8.7e-54 gi|166952365|gb|ABZ04265.1| ribosomal protein rps1 ( 150) 900 212.6 1.6e-53 gi|110671466|gb|ABG81984.1| putative ribosomal pro ( 151) 892 210.8 5.8e-53 gi|72015985|ref|XP_780390.1| PREDICTED: similar to ( 151) 885 209.2 1.7e-52 gi|156221154|gb|EDO42012.1| predicted protein [Nem ( 153) 884 209.0 2.1e-52 gi|193910819|gb|EDW09686.1| GI18903 [Drosophila mo ( 151) 882 208.5 2.8e-52 gi|152940797|gb|ABS44863.1| putative ribosomal pro ( 151) 882 208.5 2.8e-52 gi|194144271|gb|EDW60667.1| GJ20727 [Drosophila vi ( 151) 881 208.3 3.3e-52 gi|50344488|emb|CAH04330.1| S14e ribosomal protein ( 151) 879 207.8 4.5e-52 gi|91091798|ref|XP_970498.1| PREDICTED: similar to ( 151) 879 207.8 4.5e-52 gi|193652347|ref|XP_001947738.1| PREDICTED: simila ( 151) 877 207.4 6.1e-52 gi|193893321|gb|EDV92187.1| GH24178 [Drosophila gr ( 151) 875 206.9 8.4e-52 gi|149286948|gb|ABR23373.1| 40S ribosomal protein ( 151) 874 206.7 9.9e-52 gi|51011526|gb|AAT92172.1| ribosomal protein S14 [ ( 151) 872 206.2 1.4e-51 gi|157690746|tpe|CAL69100.1| TPA: putative 40S rib ( 151) 872 206.2 1.4e-51 gi|94468908|gb|ABF18303.1| 40S ribosomal protein S ( 151) 871 206.0 1.6e-51 gi|17221659|dbj|BAB78484.1| ribosome like protein ( 151) 871 206.0 1.6e-51 gi|160550163|gb|ABX44786.1| putative 40S ribosomal ( 151) 869 205.6 2.2e-51 gi|49116149|gb|AAH72682.1| Similar to ribosomal pr ( 170) 869 205.6 2.4e-51 gi|193892871|gb|EDV91737.1| GH24437 [Drosophila gr ( 151) 866 204.9 3.5e-51 gi|190582422|gb|EDV22495.1| conserved hypothetical ( 151) 866 204.9 3.5e-51 gi|121543799|gb|ABM55564.1| putative ribosomal pro ( 151) 865 204.6 4.1e-51 gi|62083507|gb|AAX62478.1| ribosomal protein S14 [ ( 151) 865 204.6 4.1e-51 gi|4588920|gb|AAD26263.1| ribosomal protein S14 [S ( 151) 864 204.4 4.8e-51 gi|1173201|sp|P46295|RS14_CHLRE 40S ribosomal prot ( 153) 864 204.4 4.8e-51 gi|192913024|gb|ACF06620.1| ribosomal protein S14 ( 150) 863 204.2 5.6e-51 gi|194109011|gb|EDW31054.1| GL15135 [Drosophila pe ( 151) 863 204.2 5.6e-51 gi|1350935|sp|P48150|RS14_CAEEL 40S ribosomal prot ( 152) 863 204.2 5.6e-51 gi|194146863|gb|EDW62582.1| GJ16536 [Drosophila vi ( 151) 862 204.0 6.5e-51 gi|70909537|emb|CAJ17191.1| ribosomal protein S14e ( 152) 862 204.0 6.6e-51 gi|188572393|gb|ACD65103.1| putative 40S ribosomal ( 144) 861 203.7 7.4e-51 gi|187032718|emb|CAP28192.1| C. briggsae CBR-RPS-1 ( 152) 860 203.5 9e-51 gi|118483965|gb|ABK93870.1| unknown [Populus trich ( 150) 859 203.3 1e-50 gi|118481419|gb|ABK92652.1| unknown [Populus trich ( 150) 858 203.1 1.2e-50 gi|190650239|gb|EDV47517.1| GG19671 [Drosophila er ( 151) 858 203.1 1.2e-50 >>gi|116488050|gb|ABJ98607.1| 40S ribosomal protein S14 (161 aa) initn: 1001 init1: 1001 opt: 1011 Z-score: 1252.0 bits: 237.9 E(): 4.3e-61 Smith-Waterman score: 1011; 97.468% identity (98.734% similar) in 158 aa overlap (3-159:4-161) 10 20 30 40 50 bm0514 GVWRRR-AEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK :.:: . :::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 SNSWKRRCSTMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK 10 20 30 40 50 60 60 70 80 90 100 110 bm0514 ETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|116 ETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGP 70 80 90 100 110 120 120 130 140 150 bm0514 GAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL ::::::::::::::::::::::::::::::::::::::::: gi|116 GAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 130 140 150 160 >>gi|50403752|sp|P62263|RS14_HUMAN 40S ribosomal protein (151 aa) initn: 991 init1: 991 opt: 991 Z-score: 1227.8 bits: 233.3 E(): 9.6e-60 Smith-Waterman score: 991; 100.000% identity (100.000% similar) in 151 aa overlap (9-159:1-151) 10 20 30 40 50 60 bm0514 GVWRRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET 10 20 30 40 50 70 80 90 100 110 120 bm0514 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|504 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA 60 70 80 90 100 110 130 140 150 bm0514 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL ::::::::::::::::::::::::::::::::::::::: gi|504 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 120 130 140 150 >>gi|61369149|gb|AAX43292.1| ribosomal protein S14 [synt (152 aa) initn: 991 init1: 991 opt: 991 Z-score: 1227.7 bits: 233.3 E(): 9.6e-60 Smith-Waterman score: 991; 100.000% identity (100.000% similar) in 151 aa overlap (9-159:1-151) 10 20 30 40 50 60 bm0514 GVWRRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET 10 20 30 40 50 70 80 90 100 110 120 bm0514 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|613 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA 60 70 80 90 100 110 130 140 150 bm0514 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL ::::::::::::::::::::::::::::::::::::::: gi|613 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRLL 120 130 140 150 >>gi|3097244|emb|CAA69615.1| ribosomal protein S14 [Mus (151 aa) initn: 988 init1: 988 opt: 988 Z-score: 1224.1 bits: 232.6 E(): 1.5e-59 Smith-Waterman score: 988; 99.338% identity (100.000% similar) in 151 aa overlap (9-159:1-151) 10 20 30 40 50 60 bm0514 GVWRRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET ::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|309 MAPRKGREKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET 10 20 30 40 50 70 80 90 100 110 120 bm0514 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|309 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA 60 70 80 90 100 110 130 140 150 bm0514 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL ::::::::::::::::::::::::::::::::::::::: gi|309 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 120 130 140 150 >>gi|133785|sp|P13471|RS14_RAT 40S ribosomal protein S14 (151 aa) initn: 987 init1: 987 opt: 987 Z-score: 1222.8 bits: 232.4 E(): 1.8e-59 Smith-Waterman score: 987; 99.338% identity (100.000% similar) in 151 aa overlap (9-159:1-151) 10 20 30 40 50 60 bm0514 GVWRRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET :::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|133 MAPRKGKDKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET 10 20 30 40 50 70 80 90 100 110 120 bm0514 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|133 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA 60 70 80 90 100 110 130 140 150 bm0514 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL ::::::::::::::::::::::::::::::::::::::: gi|133 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 120 130 140 150 >>gi|163658471|gb|ABY28375.1| ribosomal protein S14 [Onc (151 aa) initn: 987 init1: 987 opt: 987 Z-score: 1222.8 bits: 232.4 E(): 1.8e-59 Smith-Waterman score: 987; 99.338% identity (100.000% similar) in 151 aa overlap (9-159:1-151) 10 20 30 40 50 60 bm0514 GVWRRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET :::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|163 MAPRKGKEKKEEQVIALGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET 10 20 30 40 50 70 80 90 100 110 120 bm0514 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA 60 70 80 90 100 110 130 140 150 bm0514 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL ::::::::::::::::::::::::::::::::::::::: gi|163 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 120 130 140 150 >>gi|37748505|gb|AAH59561.1| Ribosomal protein S14 [Dani (151 aa) initn: 987 init1: 987 opt: 987 Z-score: 1222.8 bits: 232.4 E(): 1.8e-59 Smith-Waterman score: 987; 99.338% identity (100.000% similar) in 151 aa overlap (9-159:1-151) 10 20 30 40 50 60 bm0514 GVWRRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|377 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET 10 20 30 40 50 70 80 90 100 110 120 bm0514 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA :::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::: gi|377 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGA 60 70 80 90 100 110 130 140 150 bm0514 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL ::::::::::::::::::::::::::::::::::::::: gi|377 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 120 130 140 150 >>gi|74226871|dbj|BAE27080.1| unnamed protein product [M (151 aa) initn: 985 init1: 985 opt: 985 Z-score: 1220.4 bits: 231.9 E(): 2.5e-59 Smith-Waterman score: 985; 99.338% identity (99.338% similar) in 151 aa overlap (9-159:1-151) 10 20 30 40 50 60 bm0514 GVWRRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET 10 20 30 40 50 70 80 90 100 110 120 bm0514 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA ::::::::::::::::: :::::::::::::::::::::::::::::::::::::::::: gi|742 ICRVTGGMKVKADRDESCPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA 60 70 80 90 100 110 130 140 150 bm0514 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL ::::::::::::::::::::::::::::::::::::::: gi|742 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 120 130 140 150 >>gi|15294039|gb|AAK95196.1|AF402822_1 40S ribosomal pro (151 aa) initn: 981 init1: 981 opt: 981 Z-score: 1215.5 bits: 231.0 E(): 4.6e-59 Smith-Waterman score: 981; 99.338% identity (99.338% similar) in 151 aa overlap (9-159:1-151) 10 20 30 40 50 60 bm0514 GVWRRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET :::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET 10 20 30 40 50 70 80 90 100 110 120 bm0514 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|152 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA 60 70 80 90 100 110 130 140 150 bm0514 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL :::::::::::::::::::::::::::::::::::: :: gi|152 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGVRL 120 130 140 150 >>gi|28189929|dbj|BAC56579.1| similar to ribosomal prote (145 aa) initn: 956 init1: 956 opt: 956 Z-score: 1185.0 bits: 225.3 E(): 2.3e-57 Smith-Waterman score: 956; 100.000% identity (100.000% similar) in 145 aa overlap (3-147:1-145) 10 20 30 40 50 60 bm0514 GVWRRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 WRRRAEMAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKET 10 20 30 40 50 70 80 90 100 110 120 bm0514 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|281 ICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGA 60 70 80 90 100 110 130 140 150 bm0514 QSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL ::::::::::::::::::::::::::: gi|281 QSALRALARSGMKIGRIEDVTPIPSDS 120 130 140 159 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 22:44:22 2008 done: Thu Aug 7 22:47:18 2008 Total Scan time: 583.620 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]