hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-22471921/chunk_1/iprscan-20080807-22471921.nocrc
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Query sequence: bm05143
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00411.9.fs  Ribosomal protein S11                     235.4    2.3e-73   1
PF00411.9.ls  Ribosomal protein S11                     237.3      3e-68   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF00411.9.fs    1/1      37   155 ..     1   124 []   235.4  2.3e-73
PF00411.9.ls    1/1      37   155 ..     1   124 []   237.3    3e-68

Alignments of top-scoring domains:
PF00411.9.fs: domain 1 of 1, from 37 to 155: score 235.4, E = 2.3e-73
                   *->GiaHIqasFSKKRNNTIiTiTDvkGrvvlwsSAGscGfKgsRdKsTP
                      G+ HI+asF    N+T++++TD++G +++ + +G++++K++Rd+s+P
     bm05143    37    GVCHIFASF----NDTFVHVTDLSGKETICRVTGGMKVKADRDESSP 79   

                   yAAqtaAenaAkkaieqGikaveVkikatGGnksktpGpGreaalRALar
                   yAA++aA+++A++++e+Gi+a+++k++atGGn +ktpGpG+++alRALar
     bm05143    80 YAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALAR 129  

                   sGLiItrIrDVTPlPHGnGcRpPKkRR<-*
                   sG++I+rI+DVTP+P  +++R++++RR   
     bm05143   130 SGMKIGRIEDVTPIPS-DSTRRKGGRR    155  

PF00411.9.ls: domain 1 of 1, from 37 to 155: score 237.3, E = 3e-68
                   *->GiaHIqasFSKKRNNTIiTiTDvkGrvvlwsSAGscGfKgsRdKsTP
                      G+ HI+asF    N+T++++TD++G +++ + +G++++K++Rd+s+P
     bm05143    37    GVCHIFASF----NDTFVHVTDLSGKETICRVTGGMKVKADRDESSP 79   

                   yAAqtaAenaAkkaieqGikaveVkikatGGnksktpGpGreaalRALar
                   yAA++aA+++A++++e+Gi+a+++k++atGGn +ktpGpG+++alRALar
     bm05143    80 YAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALAR 129  

                   sGLiItrIrDVTPlPHGnGcRpPKkRR<-*
                   sG++I+rI+DVTP+P  +++R++++RR   
     bm05143   130 SGMKIGRIEDVTPIPS-DSTRRKGGRR    155  

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