# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm05153.fasta.nr -Q bm05153.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm05153, 196 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6824851 sequences Expectation_n fit: rho(ln(x))= 5.0599+/-0.000185; mu= 7.5743+/- 0.010 mean_var=76.7307+/-15.448, 0's: 44 Z-trim: 44 B-trim: 2628 in 1/65 Lambda= 0.146416 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|62089246|dbj|BAD93067.1| class-I MHC-restricted ( 196) 1236 269.9 1.5e-70 gi|150438888|sp|O95727.2|CRTAM_HUMAN Cytotoxic and ( 393) 1114 244.4 1.4e-62 gi|3930163|gb|AAC80267.1| class-I MHC-restricted T ( 393) 1111 243.8 2.2e-62 gi|114640883|ref|XP_001136009.1| PREDICTED: class- ( 393) 1110 243.6 2.5e-62 gi|189069317|dbj|BAG36349.1| unnamed protein produ ( 393) 1107 242.9 3.9e-62 gi|47682681|gb|AAH70266.1| Cytotoxic and regulator ( 393) 1104 242.3 6.1e-62 gi|109109048|ref|XP_001107752.1| PREDICTED: simila ( 393) 1062 233.4 2.9e-59 gi|74202765|dbj|BAE37475.1| unnamed protein produc ( 196) 874 193.4 1.5e-47 gi|73954994|ref|XP_852857.1| PREDICTED: similar to ( 452) 878 194.6 1.6e-47 gi|194212795|ref|XP_001501510.2| PREDICTED: simila ( 393) 857 190.1 3.1e-46 gi|157279098|gb|AAI34771.1| CRTAM protein [Bos tau ( 390) 814 181.0 1.7e-43 gi|123786115|sp|Q149L7.1|CRTAM_MOUSE Cytotoxic and ( 389) 787 175.3 8.7e-42 gi|3930161|gb|AAC80266.1| class I MHC-restricted T ( 388) 769 171.5 1.2e-40 gi|119360370|ref|NP_062338.2| cytotoxic and regula ( 386) 763 170.2 2.9e-40 gi|148693580|gb|EDL25527.1| cytotoxic and regulato ( 388) 759 169.4 5.2e-40 gi|149041396|gb|EDL95237.1| cytotoxic and regulato ( 330) 720 161.1 1.4e-37 gi|26348125|dbj|BAB24204.2| unnamed protein produc ( 180) 616 138.9 3.7e-31 gi|149597358|ref|XP_001519841.1| PREDICTED: simila ( 398) 472 108.8 9.5e-22 gi|126326879|ref|XP_001380152.1| PREDICTED: simila ( 346) 433 100.5 2.6e-19 gi|2665790|gb|AAB88491.1| thymocyte activation and ( 439) 297 71.9 1.4e-10 gi|50417512|gb|AAH77420.1| MGC82176 protein [Xenop ( 284) 250 61.8 9.7e-08 gi|51235584|gb|AAT98593.1| cytotoxic and regulator ( 426) 229 57.5 2.8e-06 >>gi|62089246|dbj|BAD93067.1| class-I MHC-restricted T c (196 aa) initn: 1236 init1: 1236 opt: 1236 Z-score: 1421.9 bits: 269.9 E(): 1.5e-70 Smith-Waterman score: 1236; 100.000% identity (100.000% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 bm0515 STMWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQDPQQPTSTVSVTEDSSTSEID :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 STMWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQDPQQPTSTVSVTEDSSTSEID 10 20 30 40 50 60 70 80 90 100 110 120 bm0515 KEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSFLIFILFIIVQLFIMKLRKAHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 KEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSFLIFILFIIVQLFIMKLRKAHV 70 80 90 100 110 120 130 140 150 160 170 180 bm0515 IWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMRCMNYITKLYSEAKTKRKENVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|620 IWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMRCMNYITKLYSEAKTKRKENVQ 130 140 150 160 170 180 190 bm0515 HSKLEEKHIQVPESIV :::::::::::::::: gi|620 HSKLEEKHIQVPESIV 190 >>gi|150438888|sp|O95727.2|CRTAM_HUMAN Cytotoxic and reg (393 aa) initn: 1137 init1: 1105 opt: 1114 Z-score: 1278.6 bits: 244.4 E(): 1.4e-62 Smith-Waterman score: 1114; 96.791% identity (97.326% similar) in 187 aa overlap (10-196:208-393) 10 20 30 bm0515 STMWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQ .:: : : :::::::::::::::::::: gi|150 NTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFED-LVTDEETASDALERNSLSSQ 180 190 200 210 220 230 40 50 60 70 80 90 bm0515 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF 240 250 260 270 280 290 100 110 120 130 140 150 bm0515 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|150 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR 300 310 320 330 340 350 160 170 180 190 bm0515 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV ::::::::::::::::::::::::::::::::::::: gi|150 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV 360 370 380 390 >>gi|3930163|gb|AAC80267.1| class-I MHC-restricted T cel (393 aa) initn: 1134 init1: 1102 opt: 1111 Z-score: 1275.2 bits: 243.8 E(): 2.2e-62 Smith-Waterman score: 1111; 96.257% identity (97.326% similar) in 187 aa overlap (10-196:208-393) 10 20 30 bm0515 STMWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQ .:: : : :::::::::::::::::::: gi|393 NTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFED-LVTDEETASDALERNSLSSQ 180 190 200 210 220 230 40 50 60 70 80 90 bm0515 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|393 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF 240 250 260 270 280 290 100 110 120 130 140 150 bm0515 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|393 LIFILFIIVQLFIMKLRKAHVIWKRENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR 300 310 320 330 340 350 160 170 180 190 bm0515 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV ::::::::::::::::::::::::::::::::::::: gi|393 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV 360 370 380 390 >>gi|114640883|ref|XP_001136009.1| PREDICTED: class-I MH (393 aa) initn: 1133 init1: 1101 opt: 1110 Z-score: 1274.0 bits: 243.6 E(): 2.5e-62 Smith-Waterman score: 1110; 96.257% identity (97.326% similar) in 187 aa overlap (10-196:208-393) 10 20 30 bm0515 STMWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQ .:: : : :::::::::::::::::::: gi|114 NTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFED-LVTDEETASDALERNSLSSQ 180 190 200 210 220 230 40 50 60 70 80 90 bm0515 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF 240 250 260 270 280 290 100 110 120 130 140 150 bm0515 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|114 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSQEKNGQSSHPMR 300 310 320 330 340 350 160 170 180 190 bm0515 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV ::::::::::::::::::::::::::::::::::::: gi|114 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV 360 370 380 390 >>gi|189069317|dbj|BAG36349.1| unnamed protein product [ (393 aa) initn: 1130 init1: 1098 opt: 1107 Z-score: 1270.6 bits: 242.9 E(): 3.9e-62 Smith-Waterman score: 1107; 95.722% identity (97.326% similar) in 187 aa overlap (10-196:208-393) 10 20 30 bm0515 STMWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQ .:: : : :::::::::::::::::::: gi|189 NTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFED-LVTDEETASDALERNSLSSQ 180 190 200 210 220 230 40 50 60 70 80 90 bm0515 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:: gi|189 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLMSF 240 250 260 270 280 290 100 110 120 130 140 150 bm0515 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR ::::::::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|189 LIFILFIIVQLFIMKLRKAHVIWKRENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR 300 310 320 330 340 350 160 170 180 190 bm0515 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV ::::::::::::::::::::::::::::::::::::: gi|189 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV 360 370 380 390 >>gi|47682681|gb|AAH70266.1| Cytotoxic and regulatory T (393 aa) initn: 1127 init1: 1095 opt: 1104 Z-score: 1267.2 bits: 242.3 E(): 6.1e-62 Smith-Waterman score: 1104; 95.722% identity (97.326% similar) in 187 aa overlap (10-196:208-393) 10 20 30 bm0515 STMWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQ .:: : : :::::::::::::::::::: gi|476 NTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFED-LVTDEETASDALERNSLSSQ 180 190 200 210 220 230 40 50 60 70 80 90 bm0515 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|476 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF 240 250 260 270 280 290 100 110 120 130 140 150 bm0515 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|476 LIFILFIIVQLFIMKLRKTHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR 300 310 320 330 340 350 160 170 180 190 bm0515 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV :::::::::::.::::::::::::::::::::::::: gi|476 CMNYITKLYSEGKTKRKENVQHSKLEEKHIQVPESIV 360 370 380 390 >>gi|109109048|ref|XP_001107752.1| PREDICTED: similar to (393 aa) initn: 1053 init1: 1053 opt: 1062 Z-score: 1219.2 bits: 233.4 E(): 2.9e-59 Smith-Waterman score: 1062; 91.979% identity (95.187% similar) in 187 aa overlap (10-196:208-393) 10 20 30 bm0515 STMWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQ .:: : : ::::::::::::::::.::: gi|109 NTTSTLIIHTYGKNSTVDCIIRHRGLQGRKLVAPFRFED-LVTDEETASDALERNSVSSQ 180 190 200 210 220 230 40 50 60 70 80 90 bm0515 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF ::::::::::: ::::: ::::::::::: :::::::::::::::::::::::::::::: gi|109 DPQQPTSTVSVMEDSSTLEIDKEEKEQTTGDPDLTTEANPQYLGLARKKSGILLLTLVSF 240 250 260 270 280 290 100 110 120 130 140 150 bm0515 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::.: gi|109 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSQEKNGQSSHPVR 300 310 320 330 340 350 160 170 180 190 bm0515 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV :::::::::::::::::::::::::.::: ::::.:: gi|109 CMNYITKLYSEAKTKRKENVQHSKLNEKHTQVPETIV 360 370 380 390 >>gi|74202765|dbj|BAE37475.1| unnamed protein product [M (196 aa) initn: 846 init1: 692 opt: 874 Z-score: 1008.6 bits: 193.4 E(): 1.5e-47 Smith-Waterman score: 874; 71.717% identity (87.879% similar) in 198 aa overlap (3-196:1-196) 10 20 30 40 50 bm0515 STMWVKLLSIVAEFCFSPFLVTDEETA----SDALERNSLSSQDPQQPTSTVSVTEDSST ::.::.:.:::::::::::.:.::. ::: :..::::: ::::::::. :.:: gi|742 MWLKLISVVAEFCFSPFLVADQETSDQETSDAPEQSSLSSQALQQPTSTVSMMENSSI 10 20 30 40 50 60 70 80 90 100 110 bm0515 SEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSFLIFILFIIVQLFIMKLR : ::::::..:::: :.:::. :. ::::.::::::::::::::::::::::::::::: gi|742 PETDKEEKEHATQDPGLSTEASAQHTGLARRKSGILLLTLVSFLIFILFIIVQLFIMKLR 60 70 80 90 100 110 120 130 140 150 160 170 bm0515 KAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMRCMNYITKLYSEAKTKRK ::::.::::.:.::..:::::::::::::::.:...:. . :::::::.::: ::::. gi|742 KAHVVWKKESEISEQALESYRSRSNNEETSSQENSSQAPQSKRCMNYITRLYSGAKTKK- 120 130 140 150 160 170 180 190 bm0515 ENVQHSKLEEKHIQVPESIV ..:: :: :: .:::::: gi|742 -SAQHWKLGGKHSRVPESIV 180 190 >>gi|73954994|ref|XP_852857.1| PREDICTED: similar to cla (452 aa) initn: 869 init1: 869 opt: 878 Z-score: 1008.4 bits: 194.6 E(): 1.6e-47 Smith-Waterman score: 878; 75.936% identity (89.840% similar) in 187 aa overlap (10-196:267-452) 10 20 30 bm0515 STMWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQ .:: : : ::::.:::::: :..: ::: gi|739 NSSSLLRVHTYGKNSTVNCIIRHKGLQGRKLVAPFRFED-LVTDQETASDAPEKSSPSSQ 240 250 260 270 280 290 40 50 60 70 80 90 bm0515 DPQQPTSTVSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVSF :::::.:::.: :::::.: ::::::::::::::.:::: ::::..:::.:::::::::: gi|739 DPQQPASTVAVMEDSSTTESDKEEKEQTTQDPDLATEANLQYLGVVRKKNGILLLTLVSF 300 310 320 330 340 350 100 110 120 130 140 150 bm0515 LIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPMR :::::::::::::::::::::.::.:::.::::::::.::::.:::::.:::::. : gi|739 LIFILFIIVQLFIMKLRKAHVVWKRENEISEHTLESYKSRSNHEETSSQEKNGQTFHSKS 360 370 380 390 400 410 160 170 180 190 bm0515 CMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV .::::.:::.::::::::.:. ::: . ..::::: gi|739 YINYITQLYSDAKTKRKENAQNPKLEGEPTHIPESIV 420 430 440 450 >>gi|194212795|ref|XP_001501510.2| PREDICTED: similar to (393 aa) initn: 745 init1: 745 opt: 857 Z-score: 985.2 bits: 190.1 E(): 3.1e-46 Smith-Waterman score: 857; 75.532% identity (90.426% similar) in 188 aa overlap (10-196:207-393) 10 20 30 bm0515 STMWVKLLSIVAEFCFSPFLVTDEETASDALERNSLSSQ .:: : : ::.:..:::.::: .::::: gi|194 NSTSTLRVHTYSKNSTVDCIVRHKGLQGRKLVAVFRFED-LVADQQTASNALENSSLSSQ 180 190 200 210 220 230 40 50 60 70 80 90 bm0515 DPQQPTST-VSVTEDSSTSEIDKEEKEQTTQDPDLTTEANPQYLGLARKKSGILLLTLVS :::::.:: :.::::::::::::.:.::::::::: :::: ::.:::::::::::::::: gi|194 DPQQPASTTVAVTEDSSTSEIDKKEEEQTTQDPDLITEANRQYVGLARKKSGILLLTLVS 240 250 260 270 280 290 100 110 120 130 140 150 bm0515 FLIFILFIIVQLFIMKLRKAHVIWKKENEVSEHTLESYRSRSNNEETSSEEKNGQSSHPM :::::::::::::::::::::.:::.:::.::::::::.:::.::::::.:::.::. . gi|194 FLIFILFIIVQLFIMKLRKAHMIWKRENEISEHTLESYKSRSTNEETSSQEKNSQSKSTI 300 310 320 330 340 350 160 170 180 190 bm0515 RCMNYITKLYSEAKTKRKENVQHSKLEEKHIQVPESIV ::.:::.:::::::: ::..:..:.. :::::: gi|194 SCMSYITRLYSEAKTKGKEKAQQAKFKGDPTCVPESIV 360 370 380 390 196 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 22:50:53 2008 done: Thu Aug 7 22:53:44 2008 Total Scan time: 627.710 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]