hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-22595203/chunk_1/iprscan-20080807-22595203.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm05157 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF03731.5.ls Ku70/Ku80 N-terminal alpha/beta domain 338.3 1.2e-98 1 PF03731.5.fs Ku70/Ku80 N-terminal alpha/beta domain 336.5 4.2e-98 1 PF02735.6.fs Ku70/Ku80 beta-barrel domain 301.8 5.8e-89 1 PF02735.6.ls Ku70/Ku80 beta-barrel domain 303.8 3e-88 1 PF03730.4.ls Ku70/Ku80 C-terminal arm 143.8 4.3e-40 1 PF03730.4.fs Ku70/Ku80 C-terminal arm 142.0 1.5e-39 1 PF02037.17.fs SAP domain 39.8 5.1e-10 1 PF02037.17.ls SAP domain 41.8 2.2e-09 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03731.5.fs 1/1 41 260 .. 1 276 [] 336.5 4.2e-98 PF03731.5.ls 1/1 41 260 .. 1 276 [] 338.3 1.2e-98 PF02735.6.ls 1/1 265 472 .. 1 229 [] 303.8 3e-88 PF02735.6.fs 1/1 265 472 .. 1 229 [] 301.8 5.8e-89 PF03730.4.fs 1/1 475 563 .. 1 102 [] 142.0 1.5e-39 PF03730.4.ls 1/1 475 563 .. 1 102 [] 143.8 4.3e-40 PF02037.17.fs 1/1 577 611 .. 1 35 [] 39.8 5.1e-10 PF02037.17.ls 1/1 577 611 .. 1 35 [] 41.8 2.2e-09 Alignments of top-scoring domains: PF03731.5.fs: domain 1 of 1, from 41 to 260: score 336.5, E = 4.2e-98 *->avvFliDaspaMfesvkgseafllkkSpFeqalkcirelllrkiisn +++Fl+Das+aMfes++++e +pF++ ++ci++++++kiis+ bm05157 41 SLIFLVDASKAMFESQSEDEL-----TPFDMSIQCIQSVYISKIISS 82 dktDligvvlygTdesenkLersegfeNvtvLrsfeaedldlpgaellke d Dl++vv+ygT++++n s +f+N++vL+ +ld+pga++++e bm05157 83 DR-DLLAVVFYGTEKDKN----SVNFKNIYVLQ-----ELDNPGAKRILE 122 ldqfleqgekgladvfkfkgdssqgdllsaLwvcmdldldlqkqtgkkkl ldqf+ q +g++++++++g++s+++l+++Lwvc++l +++ ++ k+ bm05157 123 LDQFKGQ--QGQKRFQDMMGHGSDYSLSEVLWVCANL---FSD--VQFKM 165 skkrillfTnlddPfespfegvdddkldtilqkLlkadItlqfflpfSvd s+kri+lfTn+d+P+++ d++k++++++k bm05157 166 SHKRIMLFTNEDNPHGN-----DSAKASRARTK----------------- 193 aeDlrdegielnllhLVEavpndkkfdpnifYkeilklgedeenevmlsl a+Dlrd+gi+l+l+hL +++++fd+++fY++i++++ede+++v++ + bm05157 194 AGDLRDTGIFLDLMHL----KKPGGFDISLFYRDIISIAEDEDLRVHFEE 239 egedglakivkledllsrlrakktakRal<-* ++ kledll+++rak+t+kRal bm05157 240 SS--------KLEDLLRKVRAKETRKRAL 260 PF03731.5.ls: domain 1 of 1, from 41 to 260: score 338.3, E = 1.2e-98 *->avvFliDaspaMfesvkgseafllkkSpFeqalkcirelllrkiisn +++Fl+Das+aMfes++++e +pF++ ++ci++++++kiis+ bm05157 41 SLIFLVDASKAMFESQSEDEL-----TPFDMSIQCIQSVYISKIISS 82 dktDligvvlygTdesenkLersegfeNvtvLrsfeaedldlpgaellke d Dl++vv+ygT++++n s +f+N++vL+ +ld+pga++++e bm05157 83 DR-DLLAVVFYGTEKDKN----SVNFKNIYVLQ-----ELDNPGAKRILE 122 ldqfleqgekgladvfkfkgdssqgdllsaLwvcmdldldlqkqtgkkkl ldqf+ q +g++++++++g++s+++l+++Lwvc++l +++ ++ k+ bm05157 123 LDQFKGQ--QGQKRFQDMMGHGSDYSLSEVLWVCANL---FSD--VQFKM 165 skkrillfTnlddPfespfegvdddkldtilqkLlkadItlqfflpfSvd s+kri+lfTn+d+P+++ d++k++++++k bm05157 166 SHKRIMLFTNEDNPHGN-----DSAKASRARTK----------------- 193 aeDlrdegielnllhLVEavpndkkfdpnifYkeilklgedeenevmlsl a+Dlrd+gi+l+l+hL +++++fd+++fY++i++++ede+++v++ + bm05157 194 AGDLRDTGIFLDLMHL----KKPGGFDISLFYRDIISIAEDEDLRVHFEE 239 egedglakivkledllsrlrakktakRal<-* ++ kledll+++rak+t+kRal bm05157 240 SS--------KLEDLLRKVRAKETRKRAL 260 PF02735.6.ls: domain 1 of 1, from 265 to 472: score 303.8, E = 3e-88 *->lslGilplVsipVkvyynateeaekpfhvqlyreteekneevrvktr l+l+ +++ i+V+ yn++++a kp +++lyre +ne+v++ktr bm05157 265 LKLN--KDIVISVGI-YNLVQKALKPPPIKLYRE---TNEPVKTKTR 305 kvneetgkSvlevepedivKgYGEryGgdyvvlsdeeleqvkpestgpgl ++n+ tg +++p+d+++++ yG+++++l++ee+e++k++++ pgl bm05157 306 TFNTSTGG---LLLPSDTKRSQ--IYGSRQIILEKEETEELKRFDD-PGL 349 eilGFvplsslidyyyldpsyflvPddkggeGStkafsaLreallesdka +++GF+pl l++++yl+ps f++P+++ ++GS+++fsaL+ ++le+++a bm05157 350 MLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVA 399 AIaryvlrrksrprlvaLrPqeeekrDdqkiqdtpVeglvlvtLpfadev A++ry++rr+ +p++vaL+Pqeee+ Ddqkiq+tp +g+ lv+Lpfad+ bm05157 400 ALCRYTPRRNIPPYFVALVPQEEEL-DDQKIQVTP-PGFQLVFLPFADDK 447 RDsldflelnpakttekpteeqldlakqlidk<-* R +++f+e+ a t+eq+ ++k++++k bm05157 448 R-KMPFTEKIMA------TPEQVGKMKAIVEK 472 PF02735.6.fs: domain 1 of 1, from 265 to 472: score 301.8, E = 5.8e-89 *->lslGilplVsipVkvyynateeaekpfhvqlyreteekneevrvktr l+l+ +++ i+V+ yn++++a kp +++lyre +ne+v++ktr bm05157 265 LKLN--KDIVISVGI-YNLVQKALKPPPIKLYRE---TNEPVKTKTR 305 kvneetgkSvlevepedivKgYGEryGgdyvvlsdeeleqvkpestgpgl ++n+ tg +++p+d+++++ yG+++++l++ee+e++k++++ pgl bm05157 306 TFNTSTGG---LLLPSDTKRSQ--IYGSRQIILEKEETEELKRFDD-PGL 349 eilGFvplsslidyyyldpsyflvPddkggeGStkafsaLreallesdka +++GF+pl l++++yl+ps f++P+++ ++GS+++fsaL+ ++le+++a bm05157 350 MLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVA 399 AIaryvlrrksrprlvaLrPqeeekrDdqkiqdtpVeglvlvtLpfadev A++ry++rr+ +p++vaL+Pqeee+ Ddqkiq+tp +g+ lv+Lpfad+ bm05157 400 ALCRYTPRRNIPPYFVALVPQEEEL-DDQKIQVTP-PGFQLVFLPFADDK 447 RDsldflelnpakttekpteeqldlakqlidk<-* R +++f+e+ a t+eq+ ++k++++k bm05157 448 R-KMPFTEKIMA------TPEQVGKMKAIVEK 472 PF03730.4.fs: domain 1 of 1, from 475 to 563: score 142.0, E = 1.5e-39 *->dsYnpdkfpNPRvLQrhyqcLealaLdleeplpplDqhilnmletlp ++Y++d+f+NP vLQ+h+++LealaLdl+ep++++D +tlp bm05157 475 FTYRSDSFENP-VLQQHFRNLEALALDLMEPEQAVD-------LTLP 513 keeamnkrpigklkeeFklnvypkkkdqktekdifkrkqdgsreapdaKk k+eamnkr +g+l++eFk++vyp++ +++e++++krk+d e++++K+ bm05157 514 KVEAMNKR-LGSLVDEFKELVYPPD--YNPEGKVTKRKHDN--EGSGSKR 558 aKied<-* +K+e+ bm05157 559 PKVEY 563 PF03730.4.ls: domain 1 of 1, from 475 to 563: score 143.8, E = 4.3e-40 *->dsYnpdkfpNPRvLQrhyqcLealaLdleeplpplDqhilnmletlp ++Y++d+f+NP vLQ+h+++LealaLdl+ep++++D +tlp bm05157 475 FTYRSDSFENP-VLQQHFRNLEALALDLMEPEQAVD-------LTLP 513 keeamnkrpigklkeeFklnvypkkkdqktekdifkrkqdgsreapdaKk k+eamnkr +g+l++eFk++vyp++ +++e++++krk+d e++++K+ bm05157 514 KVEAMNKR-LGSLVDEFKELVYPPD--YNPEGKVTKRKHDN--EGSGSKR 558 aKied<-* +K+e+ bm05157 559 PKVEY 563 PF02037.17.fs: domain 1 of 1, from 577 to 611: score 39.8, E = 5.1e-10 *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-* l k++V++LKe ++++GL+ + kK+eL+e L++++ bm05157 577 LGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHF 611 PF02037.17.ls: domain 1 of 1, from 577 to 611: score 41.8, E = 2.2e-09 *->lskLkVseLKeeLkkrGLstsGkKaeLveRLleal<-* l k++V++LKe ++++GL+ + kK+eL+e L++++ bm05157 577 LGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHF 611 //