hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-22595203/chunk_1/iprscan-20080807-22595203.nocrc
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Query sequence: bm05157
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00578 ku70: ATP-dependent DNA helicase ii, 70  kDa  1255.8          0   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00578   1/1      28   612 ..     1   593 []  1255.8        0

Alignments of top-scoring domains:
TIGR00578: domain 1 of 1, from 28 to 612: score 1255.8, E = 0
                   *->peatgdygysgrdgllflvdaskamfepsdgedeltpfdmciqciks
                      +ea+gdy+ysgrd+l+flvdaskamfe s++edeltpfdm+iqci+s
     bm05157    28    LEASGDYKYSGRDSLIFLVDASKAMFE-SQSEDELTPFDMSIQCIQS 73   

                   vylskiissdkdllgvvfyGtekdknsnnfkniyvlqdldnPGakrvlel
                   vy+skiissd+dll+vvfyGtekdkns+nfkniyvlq+ldnPGakr+lel
     bm05157    74 VYISKIISSDRDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAKRILEL 123  

                   dqlkgdeGpkkfrdtyGhgsdyslgevlWtcanlfsdvqlrlghkrillf
                   dq+kg++G+k+f+d++Ghgsdysl+evlW+canlfsdvq++++hkri+lf
     bm05157   124 DQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMSHKRIMLF 173  

                   tneddPhggdgakadkartkagdlrdtGifldlvhlkkPGgkkfdpslfy
                   tned+Phg+d+aka++artkagdlrdtGifldl+hlkkPGg  fd+slfy
     bm05157   174 TNEDNPHGNDSAKASRARTKAGDLRDTGIFLDLMHLKKPGG--FDISLFY 221  

                   rdlitdaededlgvhpeesdkledlllkvraketkkralsrlpfwlgpdv
                   rd+i++aededl+vh+ees+kledll+kvraket+kralsrl+++l++d+
     bm05157   222 RDIISIAEDEDLRVHFEESSKLEDLLRKVRAKETRKRALSRLKLKLNKDI 271  

                   klsvglynlvqkagkPapvrlyretnepvktktrtfngdtgslllPgdtk
                   ++svg+ynlvqka+kP+p++lyretnepvktktrtfn++tg+lllP+dtk
     bm05157   272 VISVGIYNLVQKALKPPPIKLYRETNEPVKTKTRTFNTSTGGLLLPSDTK 321  

                   rsqtyGgrqiylekeeteelkrfdpPGlfllGfkPlsllkkhhhlrPslf
                   rsq+yG+rqi+lekeeteelkrfd+PGl+l+GfkPl+llkkhh+lrPslf
     bm05157   322 RSQIYGSRQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLF 371  

                   vyPeeglvrGsttlfsallqkclekevaalcryisrrntpPklvallpqe
                   vyPee+lv+Gs+tlfsall+kclekevaalcry++rrn+pP++val+pqe
     bm05157   372 VYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQE 421  

                   eeldpqglqvtPpGfhlvflPfaddkrklpftekGtvkatpeqvdkakgi
                   eeld+q++qvtPpGf+lvflPfaddkrk+pftek  ++atpeqv+k+k+i
     bm05157   422 EELDDQKIQVTPPGFQLVFLPFADDKRKMPFTEK--IMATPEQVGKMKAI 469  

                   veklrftyrpdsfenPvlqghfrnlealaldllepeqpkdltlPkhekmk
                   veklrftyr+dsfenPvlq+hfrnlealaldl+epeq++dltlPk+e+m+
     bm05157   470 VEKLRFTYRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLTLPKVEAMN 519  

                   krlGelvdefkelvyPpgcynpegksakrkqagegggskkpkvenseenv
                   krlG+lvdefkelvyPp+ ynpegk++krk+++eg+gsk+pkve+see  
     bm05157   520 KRLGSLVDEFKELVYPPD-YNPEGKVTKRKHDNEGSGSKRPKVEYSEE-- 566  

                   dlrehakkGtlgkltvpvlkdfckayGlrsggkkqelldaltkhlk<-*
                   +l++h++kGtlgk+tvp+lk++c+ayGl+sg+kkqell+altkh++   
     bm05157   567 ELKTHISKGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQ    612  

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