hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-23060786/chunk_1/iprscan-20080807-23060786.nocrc
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Query sequence: bm05174
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01342.11.fs SAND domain                                    121.6      7e-35   1
PF01342.11.ls SAND domain                                     95.5    1.5e-25   1
PF01753.9.fs MYND finger                                     46.1    3.3e-14   1
PF01753.9.ls MYND finger                                     39.7    9.6e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01342.11.fs   1/1       1    60 [.    23    86 .]   121.6    7e-35
PF01342.11.ls   1/1       1    60 [.     1    86 []    95.5  1.5e-25
PF01753.9.fs   1/1     291   323 ..     1    38 [.    46.1  3.3e-14
PF01753.9.ls   1/1     291   321 ..     1    43 []    39.7  9.6e-09

Alignments of top-scoring domains:
PF01342.11.fs: domain 1 of 1, from 1 to 60: score 121.6, E = 7e-35
                   *->LykkkFksPGisvkCIqyedGkwlTPkeFEiegGkgrsKDWKrsIRc
                      Lyk++++s G++++CI++++ +w++P+eFE+++G+++sKDWKrsIR+
     bm05174     1    LYKNRLGS-GGRGRCIKQGE-NWYSPTEFEAMAGRASSKDWKRSIRY 45   

                   gRSGssLreLmengtld<-*
                   +  G++L++L+++g+l+   
     bm05174    46 A--GRPLQCLIQDGILN    60   

PF01342.11.ls: domain 1 of 1, from 1 to 60: score 95.5, E = 1.5e-25
                   *->eenvdfkaselPqvTCGevkGiLykkkFksPGisvkCIqyedGkwlT
                                            Lyk++++s G++++CI++++ +w++
     bm05174     1    ----------------------LYKNRLGS-GGRGRCIKQGE-NWYS 23   

                   PkeFEiegGkgrsKDWKrsIRcgRSGssLreLmengtld<-*
                   P+eFE+++G+++sKDWKrsIR++  G++L++L+++g+l+   
     bm05174    24 PTEFEAMAGRASSKDWKRSIRYA--GRPLQCLIQDGILN    60   

PF01753.9.fs: domain 1 of 1, from 291 to 323: score 46.1, E = 3.3e-14
                   *->CanCgreatksrqLkkCsrCknarYCSkeCQrkdWllg<-*
                      C nCgrea++     +C++C++++YCS +CQrk W+l+   
     bm05174   291    CVNCGREAMS-----ECTGCHKVNYCSTFCQRKRWSLT    323  

PF01753.9.ls: domain 1 of 1, from 291 to 321: score 39.7, E = 9.6e-09
                   *->CanCgreatksrqLkkCsrCknarYCSkeCQrkdWllgHkreC<-*
                      C nCgrea++     +C++C++++YCS +CQrk W+          
     bm05174   291    CVNCGREAMS-----ECTGCHKVNYCSTFCQRKRWS-------    321  

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