hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090526/iprscan-20090526-15195971/chunk_1/iprscan-20090526-15195971.nocrc
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Query sequence: bm05211
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model       Description                                 Score    E-value  N 
--------    -----------                                 -----    ------- ---
PF00085.10.ls Thioredoxin                                  -7.0    0.00058   1

Parsed for domains:
Model       Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------    ------- ----- -----    ----- -----      -----  -------
PF00085.10.ls   1/1     133   244 ..     1   111 []    -7.0  0.00058

Alignments of top-scoring domains:
PF00085.10.ls: domain 1 of 1, from 133 to 244: score -7.0, E = 0.00058
                   *->vvlvltdenFdeevaksde.kkpVLVdFYApWCGpCKmlAPeyeklA
                       ++  +d++ dee+    +++  ++V+F+A W   C+ +AP+y+ l+
     bm05211   133    YIKYFNDKTIDEELER--DkRVTWIVEFFANWSNDCQSFAPIYADLS 177  

                   qeykdetsdvkfaKVDaDenpdlaskygVrg......fPTlkffknGkkv
                    +y  +   + f KVD+   +d+  +y+V+ ++ +++ PTl++f++Gk++
     bm05211   178 LKYNCT--GLNFGKVDVGRYTDVSTRYKVSTspltkqLPTLILFQGGKEA 225  

                   epidyvGaRtkddLvafikkh<-*
                        +   +k   v++  ++   
     bm05211   226 MR-RPQID-KKGRAVSWTFSE    244  

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