hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-23120683/chunk_1/iprscan-20080807-23120683.nocrc
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Query sequence: bm05234
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00001.12.fs 7 transmembrane receptor (rhodopsin family)    347.2   2.5e-115   1
PF00001.12.ls 7 transmembrane receptor (rhodopsin family)    349.1   6.8e-102   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00001.12.fs   1/1      62   436 ..     1   272 []   347.2 2.5e-115
PF00001.12.ls   1/1      62   436 ..     1   272 []   349.1 6.8e-102

Alignments of top-scoring domains:
PF00001.12.fs: domain 1 of 1, from 62 to 436: score 347.2, E = 2.5e-115
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+LV+++++r+k l+t+tn++i++LAvADLL++++++pw++y +vg
     bm05234    62    GNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVG 108  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +W f+++ C++++ ldv+ ++aSil+L+aISiDRY A+  P+ y++r 
     bm05234   109 --EWKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRY 156  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +s+rr  v+i++vWvl++ +s P  lf+ ++  +++        C i  p
     bm05234   157 SSKRRVTVMISIVWVLSFTISCPL-LFGLNNADQNE--------CIIANP 197  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                    +            +++s++v+F++P++v l  Y  I+++lr+r+++  +
     bm05234   198 AF------------VVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNT 235  

                   ..................................................
                   +++++  + + + + +++ +++++ +  +   +++++ + ++++ +  ++
     bm05234   236 krssrafrahlraplkgncthpedmklctvimksngsfpvnrrrveaarr 285  

                   ..................................................
                    ++ + +  ++++++++++ ++ ++++++ + +++++++ +++++++ ++
     bm05234   286 aqelememlsstsppertryspippshhqltlpdpshhglhstpdspakp 335  

                   ....................................kkrsskerkaaktl
                   +++++ +++++  +  + ++ ++++++++ ++ +++k +++ke+ka+ +l
     bm05234   336 eknghakdhpkiakifeiqtmpngktrtslktmsrrKLSQQKEKKATQML 385  

                   lvvvvvFvlCWlPyfivllldtlc.lsiimsssCelervlptallvtlwL
                   ++v++vF++CWlP+fi+ +l+ +c+++           ++p ++++++wL
     bm05234   386 AIVLGVFIICWLPFFITHILNIHCdCN-----------IPPVLYSAFTWL 424  

                   ayvNsclNPiIY<-*
                   +yvNs++NPiIY   
     bm05234   425 GYVNSAVNPIIY    436  

PF00001.12.ls: domain 1 of 1, from 62 to 436: score 349.1, E = 6.8e-102
                   *->GNlLVilvilrtkklrtptnifilNLAvADLLflltlppwalyylvg
                      GN+LV+++++r+k l+t+tn++i++LAvADLL++++++pw++y +vg
     bm05234    62    GNVLVCMAVSREKALQTTTNYLIVSLAVADLLVATLVMPWVVYLEVG 108  

                   gedWpfGsalCklvtaldvvnmyaSillLtaISiDRYlAIvhPlryrrrr
                     +W f+++ C++++ ldv+ ++aSil+L+aISiDRY A+  P+ y++r 
     bm05234   109 --EWKFSRIHCDIFVTLDVMMCTASILNLCAISIDRYTAVAMPMLYNTRY 156  

                   tsprrAkvvillvWvlalllslPpllfswvktveegngvvnvttClidfp
                   +s+rr  v+i++vWvl++ +s P  lf+ ++  +++        C i  p
     bm05234   157 SSKRRVTVMISIVWVLSFTISCPL-LFGLNNADQNE--------CIIANP 197  

                   evstasvktwlvsyallstlvgFvlPllvilvcYtrIlrtlrkrarkgas
                    +            +++s++v+F++P++v l  Y  I+++lr+r+++  +
     bm05234   198 AF------------VVYSSIVSFYVPFIVTLLVYIKIYIVLRRRRKRVNT 235  

                   ..................................................
                   +++++  + + + + +++ +++++ +  +   +++++ + ++++ +  ++
     bm05234   236 krssrafrahlraplkgncthpedmklctvimksngsfpvnrrrveaarr 285  

                   ..................................................
                    ++ + +  ++++++++++ ++ ++++++ + +++++++ +++++++ ++
     bm05234   286 aqelememlsstsppertryspippshhqltlpdpshhglhstpdspakp 335  

                   ....................................kkrsskerkaaktl
                   +++++ +++++  +  + ++ ++++++++ ++ +++k +++ke+ka+ +l
     bm05234   336 eknghakdhpkiakifeiqtmpngktrtslktmsrrKLSQQKEKKATQML 385  

                   lvvvvvFvlCWlPyfivllldtlc.lsiimsssCelervlptallvtlwL
                   ++v++vF++CWlP+fi+ +l+ +c+++           ++p ++++++wL
     bm05234   386 AIVLGVFIICWLPFFITHILNIHCdCN-----------IPPVLYSAFTWL 424  

                   ayvNsclNPiIY<-*
                   +yvNs++NPiIY   
     bm05234   425 GYVNSAVNPIIY    436  

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