hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-23175602/chunk_1/iprscan-20080807-23175602.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm05240 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00749.11.ls tRNA synthetases class I (E and Q), c 595.8 3.7e-176 1 PF00749.11.fs tRNA synthetases class I (E and Q), c 593.8 1.5e-175 1 PF03950.8.ls tRNA synthetases class I (E and Q), a 312.4 7.4e-91 1 PF03950.8.fs tRNA synthetases class I (E and Q), a 310.5 2.8e-90 1 PF04558.5.fs Glutaminyl-tRNA synthetase, non-speci 208.7 5.1e-67 1 PF04558.5.ls Glutaminyl-tRNA synthetase, non-speci 210.5 3.5e-60 1 PF04557.5.fs Glutaminyl-tRNA synthetase, non-speci 66.7 2.4e-19 1 PF04557.5.ls Glutaminyl-tRNA synthetase, non-speci 68.6 1.8e-17 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04558.5.fs 1/1 2 164 .. 1 174 [] 208.7 5.1e-67 PF04558.5.ls 1/1 2 164 .. 1 174 [] 210.5 3.5e-60 PF04557.5.fs 1/1 165 257 .. 1 100 [] 66.7 2.4e-19 PF04557.5.ls 1/1 165 257 .. 1 100 [] 68.6 1.8e-17 PF00749.11.ls 1/1 264 564 .. 1 326 [] 595.8 3.7e-176 PF00749.11.fs 1/1 264 564 .. 1 326 [] 593.8 1.5e-175 PF03950.8.fs 1/1 566 753 .. 1 209 [] 310.5 2.8e-90 PF03950.8.ls 1/1 566 753 .. 1 209 [] 312.4 7.4e-91 Alignments of top-scoring domains: PF04558.5.fs: domain 1 of 1, from 2 to 164: score 208.7, E = 5.1e-67 *->sdkEeLlaLFskIGLdekKaKETlkNkKvtsnLqkvIkeAgvtsgAg ++ ++l+LF+++GL+e+Ka+ETlkN +++ L + A t g + bm05240 2 MAALDSLSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGST 48 cskstGnLLYtLATklkaqalpHrpAHEAllVkYIvNgklkTslQldAAl ++k tG LLY LA+ l + + +lV+YI+++k+ T++Ql+AAl bm05240 49 IDKATGILLYGLASRLR--DTRRLS----FLVSYIASKKIHTEPQLSAAL 92 eYlkatgesLnenidlneFEksCGVGVVvTpEQIeqaVsdyIeeNKekIL eY++++ + id +FE +CGVGV vTpEQIe aV + I+ ++ +L bm05240 93 EYVRSHPL---DPIDTVDFERECGVGVIVTPEQIEEAVEAAINRHRPQLL 139 eqRYrLlnpgkllgvkvrkeLKWADak<-* +RY+ +n g l+g + r+ LKWAD+k bm05240 140 VERYH-FNMGLLMG-EARAVLKWADGK 164 PF04558.5.ls: domain 1 of 1, from 2 to 164: score 210.5, E = 3.5e-60 *->sdkEeLlaLFskIGLdekKaKETlkNkKvtsnLqkvIkeAgvtsgAg ++ ++l+LF+++GL+e+Ka+ETlkN +++ L + A t g + bm05240 2 MAALDSLSLFTSLGLSEQKARETLKNSALSAQLREAATQAQQTLGST 48 cskstGnLLYtLATklkaqalpHrpAHEAllVkYIvNgklkTslQldAAl ++k tG LLY LA+ l + + +lV+YI+++k+ T++Ql+AAl bm05240 49 IDKATGILLYGLASRLR--DTRRLS----FLVSYIASKKIHTEPQLSAAL 92 eYlkatgesLnenidlneFEksCGVGVVvTpEQIeqaVsdyIeeNKekIL eY++++ + id +FE +CGVGV vTpEQIe aV + I+ ++ +L bm05240 93 EYVRSHPL---DPIDTVDFERECGVGVIVTPEQIEEAVEAAINRHRPQLL 139 eqRYrLlnpgkllgvkvrkeLKWADak<-* +RY+ +n g l+g + r+ LKWAD+k bm05240 140 VERYH-FNMGLLMG-EARAVLKWADGK 164 PF04557.5.fs: domain 1 of 1, from 165 to 257: score 66.7, E = 2.4e-19 *->sVKqliDakileLLGPKTeaDlaagKpkGakkknkkPkAaKtedakt +K ++D +l LLGPK eaDl+ K+ k ++ d t bm05240 165 MIKNEVDMQVLHLLGPKLEADLE--KKF--KVAKAR---LEETDRRT 204 paattttpeesslgpktimpneeflfklHkpgenFsdggilncentkplL +++ + +e +++ + + ++ k+Hkpgen++ g++++++t lL bm05240 205 AKDVVENGETADQTLSLMEQLRGEALKFHKPGENYKTPGYVVTPHTMNLL 254 mkH<-* + H bm05240 255 KQH 257 PF04557.5.ls: domain 1 of 1, from 165 to 257: score 68.6, E = 1.8e-17 *->sVKqliDakileLLGPKTeaDlaagKpkGakkknkkPkAaKtedakt +K ++D +l LLGPK eaDl+ K+ k ++ d t bm05240 165 MIKNEVDMQVLHLLGPKLEADLE--KKF--KVAKAR---LEETDRRT 204 paattttpeesslgpktimpneeflfklHkpgenFsdggilncentkplL +++ + +e +++ + + ++ k+Hkpgen++ g++++++t lL bm05240 205 AKDVVENGETADQTLSLMEQLRGEALKFHKPGENYKTPGYVVTPHTMNLL 254 mkH<-* + H bm05240 255 KQH 257 PF00749.11.ls: domain 1 of 1, from 264 to 564: score 595.8, E = 3.7e-176 *->kVrTRFAPSPTGyLHIGhArtALfNylfAknhnGkfilRieDTDpeR +VrTRF+P+P+G+LHIGhA++++fN+++Ak++nG ++lR++DT+pe+ bm05240 264 QVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEK 310 ekpEyeesIledLkWLGikwDESpdvgggygpyyqSdrfdiyykyaeeLI e++ ++++I+++++WLG+++ y+++y+Sd+fd++y++a+eLI bm05240 311 EEAKFFTAICDMVAWLGYTP---------YKVTYASDYFDQLYAWAVELI 351 ekGlAYvCfctpEeLeeeReeqedpalgSperprYdeecLrlfeEemkkg ++GlAYvC+++ EeL+ ++ +l+Sp+r+r++ee+L lf E m+kg bm05240 352 RRGLAYVCHQRGEELKGHN------TLPSPWRDRPMEESLLLF-EAMRKG 394 eaeggpatvRfKipmespnyemrDlVrGrikfepsalhdrvglKwdgyPT ++ +g+at+R+K+ me + +D+V++r+k++p h+r+g+Kw++yPT bm05240 395 KFSEGEATLRMKLVME-D--GKMDPVAYRVKYTP---HHRTGDKWCIYPT 438 YdFAvviDDalmgITHvlRgeEhldntpkqiwiyeAlgwevippfiHlyl Yd++++++D++++ITH+l+++E+++++ +++w+++Al+++ +p +++y+ bm05240 439 YDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVY--CPVQWEYG 486 rlNldgtkLSKRKlslsVfisqvkgwGdlpeAllnfLrrlGwspegirEf rlNl++ ++SKRK+ ++V+++ v++w+d+++++l++Lrr+G++pe+i++f bm05240 487 RLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNF 536 ftreeliksfdlnrlsksleaFdrkkLdw<-* ++r +++ ++ ++++ + lea++r++L++ bm05240 537 CARVGVTVAQ-TTMEPHLLEACVRDVLND 564 PF00749.11.fs: domain 1 of 1, from 264 to 564: score 593.8, E = 1.5e-175 *->kVrTRFAPSPTGyLHIGhArtALfNylfAknhnGkfilRieDTDpeR +VrTRF+P+P+G+LHIGhA++++fN+++Ak++nG ++lR++DT+pe+ bm05240 264 QVRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEK 310 ekpEyeesIledLkWLGikwDESpdvgggygpyyqSdrfdiyykyaeeLI e++ ++++I+++++WLG+++ y+++y+Sd+fd++y++a+eLI bm05240 311 EEAKFFTAICDMVAWLGYTP---------YKVTYASDYFDQLYAWAVELI 351 ekGlAYvCfctpEeLeeeReeqedpalgSperprYdeecLrlfeEemkkg ++GlAYvC+++ EeL+ ++ +l+Sp+r+r++ee+L lf E m+kg bm05240 352 RRGLAYVCHQRGEELKGHN------TLPSPWRDRPMEESLLLF-EAMRKG 394 eaeggpatvRfKipmespnyemrDlVrGrikfepsalhdrvglKwdgyPT ++ +g+at+R+K+ me + +D+V++r+k++p h+r+g+Kw++yPT bm05240 395 KFSEGEATLRMKLVME-D--GKMDPVAYRVKYTP---HHRTGDKWCIYPT 438 YdFAvviDDalmgITHvlRgeEhldntpkqiwiyeAlgwevippfiHlyl Yd++++++D++++ITH+l+++E+++++ +++w+++Al+++ +p +++y+ bm05240 439 YDYTHCLCDSIEHITHSLCTKEFQARRSSYFWLCNALDVY--CPVQWEYG 486 rlNldgtkLSKRKlslsVfisqvkgwGdlpeAllnfLrrlGwspegirEf rlNl++ ++SKRK+ ++V+++ v++w+d+++++l++Lrr+G++pe+i++f bm05240 487 RLNLHYAVVSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNF 536 ftreeliksfdlnrlsksleaFdrkkLdw<-* ++r +++ ++ ++++ + lea++r++L++ bm05240 537 CARVGVTVAQ-TTMEPHLLEACVRDVLND 564 PF03950.8.fs: domain 1 of 1, from 566 to 753: score 310.5, E = 2.8e-90 *->APRymaVldPvkevvieNlpeskeeeeleikmvPlHPkdPemGeRev APR+maVl+ ++ v+i+N+p++k +l+i +vP++P d++ G+++v bm05240 566 APRAMAVLESLR-VIITNFPAAK---SLDI-QVPNFPADETKGFHQV 607 pftpkeiyIerdDfeEeadKgykRLkeGeeVrLmrwgnyvikaekvefkd pf + ++Ier+Df+Ee+++g+kRL++G++V+L r+ +yvi ++v+ k+ bm05240 608 PFA-PIVFIERTDFKEEPEPGFKRLAWGQPVGL-RHTGYVIELQHVV-KG 654 daeGniteldcsyDpdtleklpekgkKpKgiIhWVpaesenhpvpvEvrl + +G++++l++ t++++++ g+KpK++IhWV+++ +++Evrl bm05240 655 P-SGCVESLEV-----TCRRADA-GEKPKAFIHWVSQP-----LMCEVRL 692 YDrLFtvenPeede.vpgdFlddinpdSlvvvkgaGlaEpalakdlkvgd Y+rLF+++nPe++++vpg+Fl+d+n Sl+vv++a l+++++a +k+ d bm05240 693 YERLFQHKNPEDPTeVPGGFLSDLNLASLHVVDAA-LVDCSVA-LAKPFD 740 ifQFERfGYfrvD<-* fQFER+GYf vD bm05240 741 KFQFERLGYFSVD 753 PF03950.8.ls: domain 1 of 1, from 566 to 753: score 312.4, E = 7.4e-91 *->APRymaVldPvkevvieNlpeskeeeeleikmvPlHPkdPemGeRev APR+maVl+ ++ v+i+N+p++k +l+i +vP++P d++ G+++v bm05240 566 APRAMAVLESLR-VIITNFPAAK---SLDI-QVPNFPADETKGFHQV 607 pftpkeiyIerdDfeEeadKgykRLkeGeeVrLmrwgnyvikaekvefkd pf + ++Ier+Df+Ee+++g+kRL++G++V+L r+ +yvi ++v+ k+ bm05240 608 PFA-PIVFIERTDFKEEPEPGFKRLAWGQPVGL-RHTGYVIELQHVV-KG 654 daeGniteldcsyDpdtleklpekgkKpKgiIhWVpaesenhpvpvEvrl + +G++++l++ t++++++ g+KpK++IhWV+++ +++Evrl bm05240 655 P-SGCVESLEV-----TCRRADA-GEKPKAFIHWVSQP-----LMCEVRL 692 YDrLFtvenPeede.vpgdFlddinpdSlvvvkgaGlaEpalakdlkvgd Y+rLF+++nPe++++vpg+Fl+d+n Sl+vv++a l+++++a +k+ d bm05240 693 YERLFQHKNPEDPTeVPGGFLSDLNLASLHVVDAA-LVDCSVA-LAKPFD 740 ifQFERfGYfrvD<-* fQFER+GYf vD bm05240 741 KFQFERLGYFSVD 753 //