hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/TIGRFAMs_HMM.LIB.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-23175602/chunk_1/iprscan-20080807-23175602.nocrc
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Query sequence: bm05240
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TIGR00440 glnS: glutaminyl-tRNA synthetase               713.8   3.9e-212   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TIGR00440   1/1     265   775 ..     1   564 []   713.8 3.9e-212

Alignments of top-scoring domains:
TIGR00440: domain 1 of 1, from 265 to 775: score 713.8, E = 3.9e-212
                   *->VhTRFPPEPNGYLHIGHaKsIclNFGlAkeykGtCnLRFDDTNPvKE
                      V+TRFPPEPNG LHIGHaK+I  NFG+Ak  +G C+LRFDDTNP+KE
     bm05240   265    VRTRFPPEPNGILHIGHAKAINFNFGYAKANNGICFLRFDDTNPEKE 311  

                   dvEYveSIKrdVeWLGFkwegkirYsSDYFDeLyryAveLIkkGlAYVde
                   +  ++  I  +V WLG+ +  k++Y+SDYFD+Ly++AveLI++GlAYV++
     bm05240   312 EAKFFTAICDMVAWLGYTP-YKVTYASDYFDQLYAWAVELIRRGLAYVCH 360  

                   ltpeeireyRGtltdGtPGGeRknspyRDrsiEeNLalFekMrdGkfkeG
                      ee++   G  t   P       p+RDr  Ee L lFe Mr Gkf eG
     bm05240   361 QRGEELK---GHNTL--PS------PWRDRPMEESLLLFEAMRKGKFSEG 399  

                   kAiLRaKiDlaSPfivMrdpvlYRikfaeHhqTGtKWcIYPmYDFTHCis
                   +A LR+K  +    +   dpv+YR+k+ +Hh+TG+KWcIYP+YD+THC+ 
     bm05240   400 EATLRMKLVMEDGKM---DPVAYRVKYTPHHRTGDKWCIYPTYDYTHCLC 446  

                   DalEnITHSLCTlEFqdnRrlYdWvldnihiervrPaQyEfsRLNlegTv
                   D++E ITHSLCT EFq  R +Y W+++   +    P Q E++RLNl + v
     bm05240   447 DSIEHITHSLCTKEFQARRSSYFWLCNALDVY--CPVQWEYGRLNLHYAV 494  

                   lSKRKlakLVddkfVeGWdDPRlpTisglRRRGytpasireFikriGVTk
                   +SKRK+++LV    V+ WdDPRl+T+ +lRRRG++p +i  F+ r+GVT 
     bm05240   495 VSKRKILQLVATGAVRDWDDPRLFTLTALRRRGFPPEAINNFCARVGVTV 544  

                   qdnnievvrlEsciRedLnenaPRaMaViDPVkvVieNlsdeyEelvTiP
                     ++ e   lE+c+R+ Ln++aPRaMaV+   +v+i N+       + +P
     bm05240   545 AQTTMEPHLLEACVRDVLNDTAPRAMAVLESLRVIITNFPAAKSLDIQVP 594  

                   nhPnkPElGeRqvPFtnelYIdRaDFrEeanDKqykRLvlgkeVGrlrna
                   n P     G  qvPF   ++I+R DF+Ee +   +kRL  g++VG+    
     bm05240   595 NFPADETKGFHQVPFAPIVFIERTDFKEEPE-PGFKRLAWGQPVGLRHTG 643  

                   yvikaervEKDaaGkIttIfvtYDnktlsKepadgrKvKgvIhWVsassk
                   yvi  + v K   G +    vt            g K+K +IhWVs  + 
     bm05240   644 YVIELQHVVKGPSGCVESLEVTCRRADA------GEKPKAFIHWVS--QP 685  

                   ypsPLRvtEiRlYdrLFkvpN...PgsaeddflsviNPeSelViKqgfvE
                   +       E+RlY+rLF+  N+++P   + +fls++N  S  V+   +v 
     bm05240   686 LM-----CEVRLYERLFQHKNpedPTEVPGGFLSDLNLASLHVVDAALVD 730  

                   hslgdavankPWvvDsvknsefYveeDkDskevCrFQfeReGYFclDSke
                    s + a                            +FQfeR GYF +D  +
     bm05240   731 CSVALAKPFD------------------------KFQFERLGYFSVD-PD 755  

                   SttekvvlNrtVsLkdatsK<-*
                   S   k+v+NrtV Lk+   K   
     bm05240   756 SHQGKLVFNRTVTLKEDPGK    775  

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