# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm05308.fasta.nr -Q bm05308.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm05308, 344 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6820797 sequences Expectation_n fit: rho(ln(x))= 4.7027+/-0.000183; mu= 12.5887+/- 0.010 mean_var=70.7286+/-13.492, 0's: 32 Z-trim: 66 B-trim: 25 in 1/65 Lambda= 0.152502 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|68067549|sp|P07858|CATB_HUMAN Cathepsin B precu ( 339) 2474 553.2 2.4e-155 gi|181192|gb|AAA52129.1| preprocathepsin B gi| ( 339) 2470 552.3 4.4e-155 gi|158261501|dbj|BAF82928.1| unnamed protein produ ( 339) 2469 552.1 5.1e-155 gi|16307393|gb|AAH10240.1| Cathepsin B [Homo sapie ( 339) 2465 551.2 9.4e-155 gi|30583753|gb|AAP36125.1| Homo sapiens cathepsin ( 340) 2465 551.2 9.4e-155 gi|60816353|gb|AAX36379.1| cathepsin B [synthetic ( 339) 2461 550.3 1.7e-154 gi|75061687|sp|Q5R6D1.1|CATB_PONAB Cathepsin B pre ( 339) 2445 546.8 2e-153 gi|75076082|sp|Q4R5M2.1|CATB_MACFA Cathepsin B pre ( 339) 2412 539.5 3e-151 gi|157833437|pdb|1PBH|A Chain A, Crystal Structure ( 317) 2300 514.9 7.6e-144 gi|149698064|ref|XP_001498242.1| PREDICTED: simila ( 340) 2188 490.3 2.1e-136 gi|73993760|ref|XP_543203.2| PREDICTED: similar to ( 420) 2166 485.5 7e-135 gi|115312124|sp|P07688|CATB_BOVIN Cathepsin B prec ( 335) 2090 468.7 6.4e-130 gi|73586701|gb|AAI02998.1| CTSB protein [Bos tauru ( 335) 2081 466.7 2.5e-129 gi|187470655|sp|A1E295.1|CATB_PIG Cathepsin B prec ( 335) 2068 463.9 1.8e-128 gi|171948776|gb|ACB59245.1| cathepsin B [Sus scrof ( 335) 2063 462.8 3.9e-128 gi|47939014|gb|AAH72490.1| Cathepsin B [Rattus nor ( 339) 2047 459.2 4.5e-127 gi|1705630|sp|P00787|CATB_RAT Cathepsin B precurso ( 339) 2030 455.5 6.1e-126 gi|115712|sp|P10605|CATB_MOUSE Cathepsin B precurs ( 339) 2028 455.1 8.2e-126 gi|309202|gb|AAA37494.1| mouse preprocathepsin B ( 339) 2023 454.0 1.8e-125 gi|74213457|dbj|BAE35542.1| unnamed protein produc ( 339) 2016 452.4 5.1e-125 gi|25988674|gb|AAN76202.1| lysosomal cysteine prot ( 578) 2017 452.9 6.5e-125 gi|74221319|dbj|BAE42140.1| unnamed protein produc ( 339) 2010 451.1 1.3e-124 gi|227293|prf||1701299A cathepsin B ( 339) 1986 445.8 5e-123 gi|1942645|pdb|1MIR|A Chain A, Rat Procathepsin B ( 322) 1977 443.8 1.9e-122 gi|126303983|ref|XP_001381634.1| PREDICTED: simila ( 337) 1971 442.5 4.9e-122 gi|1168790|sp|P43233|CATB_CHICK Cathepsin B precur ( 340) 1941 435.9 4.8e-120 gi|189096178|pdb|3CBJ|A Chain A, Chagasin-Cathepsi ( 266) 1916 430.3 1.8e-118 gi|24158605|pdb|1GMY|A Chain A, Cathepsin B Comple ( 261) 1914 429.9 2.4e-118 gi|28302291|gb|AAH46667.1| Cg10992 protein [Xenopu ( 333) 1853 416.5 3.2e-114 gi|74179506|dbj|BAE44111.1| cathepsin B preproprot ( 330) 1852 416.3 3.7e-114 gi|28277314|gb|AAH44689.1| MGC53360 protein [Xenop ( 333) 1846 415.0 9.2e-114 gi|38969948|gb|AAH63365.1| Hypothetical protein MG ( 333) 1831 411.7 9.1e-113 gi|34784038|gb|AAH56688.1| Cathepsin B, a [Danio r ( 330) 1825 410.4 2.2e-112 gi|27882093|gb|AAH44517.1| Zgc:55862 [Danio rerio] ( 330) 1818 408.8 6.5e-112 gi|51038793|gb|AAT94175.1| cathepsin B [Paralichth ( 330) 1786 401.8 8.6e-110 gi|90074902|dbj|BAE87131.1| unnamed protein produc ( 296) 1756 395.2 7.7e-108 gi|116177489|gb|ABJ80691.1| cathepsin B [Hippoglos ( 330) 1754 394.8 1.1e-107 gi|37788265|gb|AAO64472.1| cathepsin B precursor [ ( 330) 1750 393.9 2.1e-107 gi|14582897|gb|AAK69705.1|AF358667_1 procathepsin ( 330) 1722 387.7 1.5e-105 gi|28373366|pdb|1ITO|A Chain A, Crystal Structure ( 256) 1712 385.4 5.7e-105 gi|203648|gb|AAA40993.1| cathepsin (EC 3.4.22.1) ( 271) 1702 383.2 2.7e-104 gi|9955277|pdb|1QDQ|A Chain A, X-Ray Crystal Struc ( 253) 1697 382.1 5.6e-104 gi|1311050|pdb|1CPJ|A Chain A, Crystal Structures ( 260) 1647 371.1 1.2e-100 gi|1127275|pdb|1CTE|A Chain A, Crystal Structures ( 254) 1621 365.4 6e-99 gi|133777414|gb|AAI15255.1| Ctsbb protein [Danio r ( 326) 1604 361.8 9.7e-98 gi|181178|gb|AAA52125.1| lysosomal proteinase cath ( 209) 1534 346.2 3e-93 gi|999909|pdb|1HUC|B Chain B, The Refined 2.15 Ang ( 205) 1497 338.0 8.5e-91 gi|31872149|gb|AAP59456.1| cathepsin B precursor [ ( 334) 1492 337.1 2.6e-90 gi|45822203|emb|CAE47498.1| cathepsin B-like prote ( 328) 1477 333.8 2.5e-89 gi|146386348|gb|ABQ23962.1| cathepsin B [Oryctolag ( 228) 1472 332.6 4.1e-89 >>gi|68067549|sp|P07858|CATB_HUMAN Cathepsin B precursor (339 aa) initn: 2474 init1: 2474 opt: 2474 Z-score: 2944.2 bits: 553.2 E(): 2.4e-155 Smith-Waterman score: 2474; 100.000% identity (100.000% similar) in 339 aa overlap (6-344:1-339) 10 20 30 40 50 60 bm0530 DPASNMWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL 10 20 30 40 50 70 80 90 100 110 120 bm0530 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE 60 70 80 90 100 110 130 140 150 160 170 180 bm0530 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 120 130 140 150 160 170 190 200 210 220 230 240 bm0530 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS 180 190 200 210 220 230 250 260 270 280 290 300 bm0530 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|680 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL 240 250 260 270 280 290 310 320 330 340 bm0530 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI :::::::::::::::::::::::::::::::::::::::::::: gi|680 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 300 310 320 330 >>gi|181192|gb|AAA52129.1| preprocathepsin B gi|1937 (339 aa) initn: 2470 init1: 2470 opt: 2470 Z-score: 2939.4 bits: 552.3 E(): 4.4e-155 Smith-Waterman score: 2470; 99.705% identity (100.000% similar) in 339 aa overlap (6-344:1-339) 10 20 30 40 50 60 bm0530 DPASNMWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL :::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|181 MWQLWASLCCLLVLANARSRPSFHPVSDELVNYVNKRNTTWQAGHNFYNVDMSYL 10 20 30 40 50 70 80 90 100 110 120 bm0530 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE 60 70 80 90 100 110 130 140 150 160 170 180 bm0530 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 120 130 140 150 160 170 190 200 210 220 230 240 bm0530 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS 180 190 200 210 220 230 250 260 270 280 290 300 bm0530 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|181 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL 240 250 260 270 280 290 310 320 330 340 bm0530 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI :::::::::::::::::::::::::::::::::::::::::::: gi|181 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 300 310 320 330 >>gi|158261501|dbj|BAF82928.1| unnamed protein product [ (339 aa) initn: 2469 init1: 2469 opt: 2469 Z-score: 2938.2 bits: 552.1 E(): 5.1e-155 Smith-Waterman score: 2469; 99.705% identity (100.000% similar) in 339 aa overlap (6-344:1-339) 10 20 30 40 50 60 bm0530 DPASNMWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 MWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL 10 20 30 40 50 70 80 90 100 110 120 bm0530 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE 60 70 80 90 100 110 130 140 150 160 170 180 bm0530 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 120 130 140 150 160 170 190 200 210 220 230 240 bm0530 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS 180 190 200 210 220 230 250 260 270 280 290 300 bm0530 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|158 EKDIMAEIYKNGPAEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL 240 250 260 270 280 290 310 320 330 340 bm0530 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI :::::::::::::::::::::::::::::::::::::::::::: gi|158 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 300 310 320 330 >>gi|16307393|gb|AAH10240.1| Cathepsin B [Homo sapiens] (339 aa) initn: 2465 init1: 2465 opt: 2465 Z-score: 2933.5 bits: 551.2 E(): 9.4e-155 Smith-Waterman score: 2465; 99.410% identity (100.000% similar) in 339 aa overlap (6-344:1-339) 10 20 30 40 50 60 bm0530 DPASNMWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL :::::::::::::::::::::::::.::::::::::::::::::::::::::.:: gi|163 MWQLWASLCCLLVLANARSRPSFHPVSDELVNYVNKRNTTWQAGHNFYNVDMGYL 10 20 30 40 50 70 80 90 100 110 120 bm0530 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE 60 70 80 90 100 110 130 140 150 160 170 180 bm0530 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 120 130 140 150 160 170 190 200 210 220 230 240 bm0530 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS 180 190 200 210 220 230 250 260 270 280 290 300 bm0530 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|163 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL 240 250 260 270 280 290 310 320 330 340 bm0530 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI :::::::::::::::::::::::::::::::::::::::::::: gi|163 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 300 310 320 330 >>gi|30583753|gb|AAP36125.1| Homo sapiens cathepsin B [s (340 aa) initn: 2465 init1: 2465 opt: 2465 Z-score: 2933.5 bits: 551.2 E(): 9.4e-155 Smith-Waterman score: 2465; 99.410% identity (100.000% similar) in 339 aa overlap (6-344:1-339) 10 20 30 40 50 60 bm0530 DPASNMWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL :::::::::::::::::::::::::.::::::::::::::::::::::::::.:: gi|305 MWQLWASLCCLLVLANARSRPSFHPVSDELVNYVNKRNTTWQAGHNFYNVDMGYL 10 20 30 40 50 70 80 90 100 110 120 bm0530 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE 60 70 80 90 100 110 130 140 150 160 170 180 bm0530 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 120 130 140 150 160 170 190 200 210 220 230 240 bm0530 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS 180 190 200 210 220 230 250 260 270 280 290 300 bm0530 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|305 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL 240 250 260 270 280 290 310 320 330 340 bm0530 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI :::::::::::::::::::::::::::::::::::::::::::: gi|305 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKIL 300 310 320 330 340 >>gi|60816353|gb|AAX36379.1| cathepsin B [synthetic cons (339 aa) initn: 2461 init1: 2461 opt: 2461 Z-score: 2928.7 bits: 550.3 E(): 1.7e-154 Smith-Waterman score: 2461; 99.410% identity (99.705% similar) in 339 aa overlap (6-344:1-339) 10 20 30 40 50 60 bm0530 DPASNMWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL :::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|608 MWQLWASLCCLLVLANARSRPSFHPVSDELVNYVNKRNTTWQAGHNFYNVDMSYL 10 20 30 40 50 70 80 90 100 110 120 bm0530 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE 60 70 80 90 100 110 130 140 150 160 170 180 bm0530 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES ::::::::::::::::::::::::::::: :::::::::::::::::::::::::::::: gi|608 AISDRICIHTNAHVSVEVSAEDLLTCCGSRCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 120 130 140 150 160 170 190 200 210 220 230 240 bm0530 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS 180 190 200 210 220 230 250 260 270 280 290 300 bm0530 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|608 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL 240 250 260 270 280 290 310 320 330 340 bm0530 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI :::::::::::::::::::::::::::::::::::::::::::: gi|608 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 300 310 320 330 >>gi|75061687|sp|Q5R6D1.1|CATB_PONAB Cathepsin B precurs (339 aa) initn: 2445 init1: 2445 opt: 2445 Z-score: 2909.7 bits: 546.8 E(): 2e-153 Smith-Waterman score: 2445; 98.230% identity (99.705% similar) in 339 aa overlap (6-344:1-339) 10 20 30 40 50 60 bm0530 DPASNMWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL ::::::::::::.::.:::::::::::::::::::::::::::::::::::.::: gi|750 MWQLWASLCCLLALADARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDVSYL 10 20 30 40 50 70 80 90 100 110 120 bm0530 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE :.:::::::::::::::::::::::: ::::::::::::::::::::::::::::::::: gi|750 KKLCGTFLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE 60 70 80 90 100 110 130 140 150 160 170 180 bm0530 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 120 130 140 150 160 170 190 200 210 220 230 240 bm0530 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS 180 190 200 210 220 230 250 260 270 280 290 300 bm0530 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 ERDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL 240 250 260 270 280 290 310 320 330 340 bm0530 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI :::::::::::::::::::::::::::::::::::::::::::: gi|750 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 300 310 320 330 >>gi|75076082|sp|Q4R5M2.1|CATB_MACFA Cathepsin B precurs (339 aa) initn: 2412 init1: 2412 opt: 2412 Z-score: 2870.5 bits: 539.5 E(): 3e-151 Smith-Waterman score: 2412; 97.050% identity (98.820% similar) in 339 aa overlap (6-344:1-339) 10 20 30 40 50 60 bm0530 DPASNMWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL :: :::::::::.:..::::::::::::::::::::.::::::::::::::.::: gi|750 MWWLWASLCCLLALGDARSRPSFHPLSDELVNYVNKQNTTWQAGHNFYNVDVSYL 10 20 30 40 50 70 80 90 100 110 120 bm0530 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE :::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::: gi|750 KRLCGTFLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE 60 70 80 90 100 110 130 140 150 160 170 180 bm0530 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES :::::::::::::::::::::::::::: :::::::::::: ::::::::::::::::.: gi|750 AISDRICIHTNAHVSVEVSAEDLLTCCGIMCGDGCNGGYPAGAWNFWTRKGLVSGGLYDS 120 130 140 150 160 170 190 200 210 220 230 240 bm0530 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS 180 190 200 210 220 230 250 260 270 280 290 300 bm0530 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|750 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL 240 250 260 270 280 290 310 320 330 340 bm0530 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI :::::::::::::::::::::::::::::::::::::::::::: gi|750 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI 300 310 320 330 >>gi|157833437|pdb|1PBH|A Chain A, Crystal Structure Of (317 aa) initn: 2300 init1: 2300 opt: 2300 Z-score: 2737.7 bits: 514.9 E(): 7.6e-144 Smith-Waterman score: 2300; 100.000% identity (100.000% similar) in 316 aa overlap (23-338:2-317) 10 20 30 40 50 60 bm0530 DPASNMWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL :::::::::::::::::::::::::::::::::::::: gi|157 XRSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL 10 20 30 70 80 90 100 110 120 bm0530 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE 40 50 60 70 80 90 130 140 150 160 170 180 bm0530 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 100 110 120 130 140 150 190 200 210 220 230 240 bm0530 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS 160 170 180 190 200 210 250 260 270 280 290 300 bm0530 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|157 EKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYWL 220 230 240 250 260 270 310 320 330 340 bm0530 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI :::::::::::::::::::::::::::::::::::::: gi|157 VANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 280 290 300 310 >>gi|149698064|ref|XP_001498242.1| PREDICTED: similar to (340 aa) initn: 2222 init1: 1316 opt: 2188 Z-score: 2604.1 bits: 490.3 E(): 2.1e-136 Smith-Waterman score: 2188; 86.176% identity (96.765% similar) in 340 aa overlap (6-344:1-340) 10 20 30 40 50 60 bm0530 DPASNMWQLWASLCCLLVLANARSRPSFHPLSDELVNYVNKRNTTWQAGHNFYNVDMSYL :::: :.: ::.::.:::::: :.:::::::::::::::::.:::::.:::.::. gi|149 MWQLLATLSCLVVLTNARSRPYFQPLSDELVNYVNKRNTTWKAGHNFHNVDLSYV 10 20 30 40 50 70 80 90 100 110 120 bm0530 KRLCGTFLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVE :::::::::::: :::: :.::. :: .::::::::.::::::::::::::::::::::: gi|149 KRLCGTFLGGPKLPQRVWFAEDVVLPENFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVE 60 70 80 90 100 110 130 140 150 160 170 180 bm0530 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES ::::::::.::.::::::::::.:::::..::::::::.:::::::::..::::::::.: gi|149 AISDRICIRTNGHVSVEVSAEDMLTCCGDQCGDGCNGGFPAEAWNFWTKQGLVSGGLYDS 120 130 140 150 160 170 190 200 210 220 230 bm0530 HVGCRPYSIPPCEHHVNGSRPPCTGEG-DTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN ::::::::::::::::::::::::::: :::::::::::::::.::.::::: .:::::. gi|149 HVGCRPYSIPPCEHHVNGSRPPCTGEGGDTPKCSKICEPGYSPSYKEDKHYGCSSYSVSS 180 190 200 210 220 230 240 250 260 270 280 290 bm0530 SEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVTGEMMGGHAIRILGWGVENGTPYW :::.:::::.::::::.::.:::::: :::::::::.:.::::::.:::::::::::::: gi|149 SEKEIMAEIFKNGPVEAAFTVYSDFLQYKSGVYQHVAGDMMGGHAVRILGWGVENGTPYW 240 250 260 270 280 290 300 310 320 330 340 bm0530 LVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTDQYWEKI ::.:::::::::::::::::::::::::::.::::: :::::..: gi|149 LVGNSWNTDWGDNGFFKILRGQDHCGIESEIVAGIPCTDQYWKRI 300 310 320 330 340 344 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Thu Aug 7 23:28:15 2008 done: Thu Aug 7 23:30:48 2008 Total Scan time: 766.570 Total Display time: 0.070 Function used was FASTA [version 34.26.5 April 26, 2007]