hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-23304843/chunk_1/iprscan-20080807-23304843.nocrc
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Query sequence: bm05308
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model         Description                               Score    E-value  N 
--------      -----------                               -----    ------- ---
PF00112.13.ls Papain family cysteine protease           416.6   3.3e-122   1
PF00112.13.fs Papain family cysteine protease           414.7   1.2e-121   1
PF08127.3.fs  Peptidase family C1 propeptide             84.6    7.6e-25   1
PF08127.3.ls  Peptidase family C1 propeptide             86.5    7.4e-23   1

Parsed for domains:
Model         Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------      ------- ----- -----    ----- -----      -----  -------
PF08127.3.fs    1/1      31    71 ..     1    44 []    84.6  7.6e-25
PF08127.3.ls    1/1      31    71 ..     1    44 []    86.5  7.4e-23
PF00112.13.fs   1/1      85   334 ..     1   286 []   414.7 1.2e-121
PF00112.13.ls   1/1      85   334 ..     1   286 []   416.6 3.3e-122

Alignments of top-scoring domains:
PF08127.3.fs: domain 1 of 1, from 31 to 71: score 84.6, E = 7.6e-25
                   *->LSdEfInyINekpntTWKAGrNfreftslsyqiKrLlGVlpdgp<-*
                      LSdE++ny+N+  ntTW+AG+Nf+ ++++sy +KrL+G++++gp   
     bm05308    31    LSDELVNYVNKR-NTTWQAGHNFY-NVDMSY-LKRLCGTFLGGP    71   

PF08127.3.ls: domain 1 of 1, from 31 to 71: score 86.5, E = 7.4e-23
                   *->LSdEfInyINekpntTWKAGrNfreftslsyqiKrLlGVlpdgp<-*
                      LSdE++ny+N+  ntTW+AG+Nf+ ++++sy +KrL+G++++gp   
     bm05308    31    LSDELVNYVNKR-NTTWQAGHNFY-NVDMSY-LKRLCGTFLGGP    71   

PF00112.13.fs: domain 1 of 1, from 85 to 334: score 414.7, E = 1.2e-121
                   *->lPesfDWRekWkggasVtpVKdQGqCGSCWAFSavgalEgrncIktg
                      lP+sfD+Re+W+++ ++ +++dQG+CGSCWAF+av+a+++r+cI+t+
     bm05308    85    LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTN 131  

                   gkwggklvsLSEQqLVDCdtedygnnsCGyGCnGGGlmdnAfeYikknqI
                      ++  v  S+ +L+ C++ +     CG+GCnG G++  A++++++   
     bm05308   132 ---AHVSVEVSAEDLLTCCG-S----MCGDGCNG-GYPAEAWNFWTR--- 169  

                   snNgGivtEsdY....gCkPYtdipPCghdgendtyy.pCpgeaydkqTg
                      +G+v+++ Y+++ gC+PY+ ipPC+h+  ++  ++pC+ge++   T+
     bm05308   170 ---KGLVSGGLYeshvGCRPYS-IPPCEHH--VNGSRpPCTGEGD---TP 210  

                   tCkykCkknskypktvakikgygdvpyn.pntkdEealqkavaknGPVsV
                   +C + C+ +  y +t+ ++k+yg+ +y+  n  +E++++++++knGPV+ 
     bm05308   211 KCSKICEPG--YSPTYKQDKHYGYNSYSvSN--SEKDIMAEIYKNGPVEG 256  

                   AidAserseyDFqlYksGlGVYtgt.geCsgepateLdHaVliVGYGten
                   A+ +++    DF lYksG  VY++++ge+ g      +Ha++i G+G+en
     bm05308   257 AFSVYS----DFLLYKSG--VYQHVtGEMMG------GHAIRILGWGVEN 294  

                   dGvdYWIvKNSWGtdWGEnGYfRiaRgknksssNeCGIaseasypi<-*
                    G++YW+v+NSW+tdWG+nG+f+i Rg++     +CGI+se++++i   
     bm05308   295 -GTPYWLVANSWNTDWGDNGFFKILRGQD-----HCGIESEVVAGI    334  

PF00112.13.ls: domain 1 of 1, from 85 to 334: score 416.6, E = 3.3e-122
                   *->lPesfDWRekWkggasVtpVKdQGqCGSCWAFSavgalEgrncIktg
                      lP+sfD+Re+W+++ ++ +++dQG+CGSCWAF+av+a+++r+cI+t+
     bm05308    85    LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTN 131  

                   gkwggklvsLSEQqLVDCdtedygnnsCGyGCnGGGlmdnAfeYikknqI
                      ++  v  S+ +L+ C++ +     CG+GCnG G++  A++++++   
     bm05308   132 ---AHVSVEVSAEDLLTCCG-S----MCGDGCNG-GYPAEAWNFWTR--- 169  

                   snNgGivtEsdY....gCkPYtdipPCghdgendtyy.pCpgeaydkqTg
                      +G+v+++ Y+++ gC+PY+ ipPC+h+  ++  ++pC+ge++   T+
     bm05308   170 ---KGLVSGGLYeshvGCRPYS-IPPCEHH--VNGSRpPCTGEGD---TP 210  

                   tCkykCkknskypktvakikgygdvpyn.pntkdEealqkavaknGPVsV
                   +C + C+ +  y +t+ ++k+yg+ +y+  n  +E++++++++knGPV+ 
     bm05308   211 KCSKICEPG--YSPTYKQDKHYGYNSYSvSN--SEKDIMAEIYKNGPVEG 256  

                   AidAserseyDFqlYksGlGVYtgt.geCsgepateLdHaVliVGYGten
                   A+ +++    DF lYksG  VY++++ge+ g      +Ha++i G+G+en
     bm05308   257 AFSVYS----DFLLYKSG--VYQHVtGEMMG------GHAIRILGWGVEN 294  

                   dGvdYWIvKNSWGtdWGEnGYfRiaRgknksssNeCGIaseasypi<-*
                    G++YW+v+NSW+tdWG+nG+f+i Rg++     +CGI+se++++i   
     bm05308   295 -GTPYWLVANSWNTDWGDNGFFKILRGQD-----HCGIESEVVAGI    334  

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