hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-23304843/chunk_1/iprscan-20080807-23304843.nocrc
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Query sequence: bm05308
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00645                                                 360.1   1.4e-103   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00645    1/1      85   334 ..     1   340 []   360.1 1.4e-103

Alignments of top-scoring domains:
SM00645: domain 1 of 1, from 85 to 334: score 360.1, E = 1.4e-103
                   *->lPesfDWRdkwpkGsaVtppVKdQGqpqqCGSCWAFSavgalEgryc
                      lP+sfD+R++wp+++ + + ++dQG   +CGSCWAF+av+a+++r+c
     bm05308    85    LPASFDAREQWPQCPTIKE-IRDQG---SCGSCWAFGAVEAISDRIC 127  

                   iksntGepyykLvlvsLSEQqLvDCdtecdpestscGnnGCnGGyGlmaw
                   i++n +      v    S+ +L+ C++      + cG+ GCnGGy+  aw
     bm05308   128 IHTNAH----VSV--EVSAEDLLTCCG------SMCGD-GCNGGYPAEAW 164  

                   Afwv.keyvignqgyGggldtEsdYpPfppCghhgn.tYtgcdggtpyen
                    fw++k+ v g+  y +   ++++Y  +ppC+hh+n+   +c g+     
     bm05308   165 NFWTrKGLVSGG-LYES-HVGCRPY-SIPPCEHHVNgSRPPCTGEG---- 207  

                   rpTPkCkykCqknkslkidYekdkvvakgitgyevpvfvpsgnkdEealk
                    +TPkC + C +++    +Y++dk+++  +++y       s+  +E++++
     bm05308   208 -DTPKCSKICEPGY--SPTYKQDKHYG--YNSY-----SVSN--SEKDIM 245  

                   kavatnGPVsVaidAsheddFqfYksNvGiYdgpadqddsegCgtglegy
                   +++++nGPV+ a+ ++ +d F +Yks  G+Y++++      g + g    
     bm05308   246 AEIYKNGPVEGAFSVY-SD-FLLYKS--GVYQHVT------GEMMG---- 281  

                   gLdHAVliVGYGtvkknitendtgrrsgsgesssgsGldesgGtkikdYW
                     +HA++i G+G      +en                     G   ++YW
     bm05308   282 --GHAIRILGWG------VEN---------------------G---TPYW 299  

                   IvKNSWGttredWGEnnGYfriamRnrggngpNeCGIaseasypi<-*
                   +v+NSW+ t  dWG+n G+f+i    rg   +++CGI+se++++i   
     bm05308   300 LVANSWN-T--DWGDN-GFFKIL---RG---QDHCGIESEVVAGI    334  

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