hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080807/iprscan-20080807-23364658/chunk_1/iprscan-20080807-23364658.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm05352 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00183.9.ls Hsp90 protein 1314.6 0 1 PF00183.9.fs Hsp90 protein 1312.5 0 1 PF02518.16.fs Histidine kinase-, DNA gyrase B-, and HSP90 64.3 6.9e-18 1 PF02518.16.ls Histidine kinase-, DNA gyrase B-, and HSP90 66.2 9.7e-17 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02518.16.fs 1/1 63 216 .. 1 127 [] 64.3 6.9e-18 PF02518.16.ls 1/1 63 216 .. 1 127 [] 66.2 9.7e-17 PF00183.9.fs 1/1 219 752 .] 1 550 [] 1312.5 0 PF00183.9.ls 1/1 219 752 .] 1 550 [] 1314.6 0 Alignments of top-scoring domains: PF02518.16.fs: domain 1 of 1, from 63 to 216: score 64.3, E = 6.9e-18 *->gdedrLrqvlsNLldNAikhapag..........geitvrlerdgdr + e++Lr+++sN+ d k +++ +++++ ++++e+++ + + + + bm05352 63 NKEIFLRELISNASDALDKIRYESltdpskldsgKELKIDIIPNPQE 109 lritVeDnGpGIppe.hk...isa.edleriFepFyrtdgpsaesladsr ++t D+G+G+++++++++ +++ + + F+ ++++ + bm05352 110 RTLTLVDTGIGMTKAdLInnlGTIaKSGTKAFMEALQAGA---------D 150 .rkigGGLtGLGLaivkelvelhgGtitvesep................. ++ig+ +G+G++ ++ ++e++ + it ++ ++ +++ +++ + + bm05352 151 iSMIGQ--FGVGFYSAYLVAEKVVV-ITKHNDDeqyawessaggsftvra 197 ......ggGttftltlPla<-* +++++ g+Gt+++l+l+++ bm05352 198 dhgepiGRGTKVILHLKED 216 PF02518.16.ls: domain 1 of 1, from 63 to 216: score 66.2, E = 9.7e-17 *->gdedrLrqvlsNLldNAikhapag..........geitvrlerdgdr + e++Lr+++sN+ d k +++ +++++ ++++e+++ + + + + bm05352 63 NKEIFLRELISNASDALDKIRYESltdpskldsgKELKIDIIPNPQE 109 lritVeDnGpGIppe.hk...isa.edleriFepFyrtdgpsaesladsr ++t D+G+G+++++++++ +++ + + F+ ++++ + bm05352 110 RTLTLVDTGIGMTKAdLInnlGTIaKSGTKAFMEALQAGA---------D 150 .rkigGGLtGLGLaivkelvelhgGtitvesep................. ++ig+ +G+G++ ++ ++e++ + it ++ ++ +++ +++ + + bm05352 151 iSMIGQ--FGVGFYSAYLVAEKVVV-ITKHNDDeqyawessaggsftvra 197 ......ggGttftltlPla<-* +++++ g+Gt+++l+l+++ bm05352 198 dhgepiGRGTKVILHLKED 216 PF00183.9.fs: domain 1 of 1, from 219 to 752: score 1312.5, E = 0 *->EYLEerrlKelVKKhSEFInYPIyLwveKevekEVpdeEeEeekeek EYLEerr Ke+VKKhS+FI+YPI L eKe+ekE++d+E+Eeek ek bm05352 219 EYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEK 265 eeeeekted.pkidDkepkeEEedeeeekeEKKkKtKKVkEtttEwElLN eee++ +e++pki+D++++e E+d +++ KKkKtKK+kE++++ E+LN bm05352 266 EEEDKDDEEkPKIEDVGSDE-EDDSGKD---KKKKTKKIKEKYIDQEELN 311 ktKPIWtRnPkdvTkEEYaaFYKSLtnDweDekpLAvkHFSVEGqLEFkA ktKPIWtRnP+d+T+EEY++FYKSLtnDweD +LAvkHFSVEGqLEF+A bm05352 312 KTKPIWTRNPDDITQEEYGEFYKSLTNDWED--HLAVKHFSVEGQLEFRA 359 iLFVPkrAPfDLFEskynkkknNIKLYVRRVFImDdcedLiPeyLsFvKG +LF+P+rAPfDLFE+k kkknNIKLYVRRVFImD c++LiPeyL+F++G bm05352 360 LLFIPRRAPFDLFENK--KKKNNIKLYVRRVFIMDSCDELIPEYLNFIRG 407 VVDSEDLPLNiSREmLQQnKiLKVIRKnLVkKcLelfneiAeedPdeEdK VVDSEDLPLNiSREmLQQ+KiLKVIRKn+VkKcLelf e+A EdK bm05352 408 VVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA------EDK 451 enYkkFYeeFsKNiKLGihEDaaNRakLAkLLRFeStkSgdeltSLkdYV enYkkFYe+FsKN+KLGihED++NR +L++LLR+++++Sgde+tSL +YV bm05352 452 ENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYV 501 tRMKegQkdIYYITGeSKkqvekSPFlErLkkKgyEVlymtdPiDEYaiq +RMKe Qk+IYYITGeSK+qv++S+F+Er++k+g+EV+ymt+PiDEY++q bm05352 502 SRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQ 551 qLkEFEGKkLvnvTKEGLeLeEsEeeKkkrEelkkefEeLckwmKeaiLg qLkEF+GK Lv+vTKEGLeL+E+EeeKkk Ee k++fE+Lck+mKe iL+ bm05352 552 QLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKE-ILD 600 dkVEKVvVSnRLvdSPCalvTSqYGWSANMERIMKAQALrDsSmsaYmss +kVEKV++SnRLv SPC++vTS+YGW+ANMERIMKAQALrD+S+++Ym++ bm05352 601 KKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMA 650 KKtlEINPrhPIIkeLrkrveaDknDktVKDLvvLLyeTALLtSGFsLed KK+lEINP+hPI+++Lr+++eaDknDk+VKDLvvLL+eTALL+SGFsLed bm05352 651 KKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLED 700 PkafAsRIyRmiklGLsIDeDeeveeedeveeaeveetepaeedaedskm P+++ +RIyRmiklGL+IDeDe ++ee+ +a +e +p+e d+++s+m bm05352 701 PQTHSNRIYRMIKLGLGIDEDEVAAEEP--NAAVPDEIPPLEGDEDASRM 748 EevD<-* EevD bm05352 749 EEVD 752 PF00183.9.ls: domain 1 of 1, from 219 to 752: score 1314.6, E = 0 *->EYLEerrlKelVKKhSEFInYPIyLwveKevekEVpdeEeEeekeek EYLEerr Ke+VKKhS+FI+YPI L eKe+ekE++d+E+Eeek ek bm05352 219 EYLEERRVKEVVKKHSQFIGYPITLYLEKEREKEISDDEAEEEKGEK 265 eeeeekted.pkidDkepkeEEedeeeekeEKKkKtKKVkEtttEwElLN eee++ +e++pki+D++++e E+d +++ KKkKtKK+kE++++ E+LN bm05352 266 EEEDKDDEEkPKIEDVGSDE-EDDSGKD---KKKKTKKIKEKYIDQEELN 311 ktKPIWtRnPkdvTkEEYaaFYKSLtnDweDekpLAvkHFSVEGqLEFkA ktKPIWtRnP+d+T+EEY++FYKSLtnDweD +LAvkHFSVEGqLEF+A bm05352 312 KTKPIWTRNPDDITQEEYGEFYKSLTNDWED--HLAVKHFSVEGQLEFRA 359 iLFVPkrAPfDLFEskynkkknNIKLYVRRVFImDdcedLiPeyLsFvKG +LF+P+rAPfDLFE+k kkknNIKLYVRRVFImD c++LiPeyL+F++G bm05352 360 LLFIPRRAPFDLFENK--KKKNNIKLYVRRVFIMDSCDELIPEYLNFIRG 407 VVDSEDLPLNiSREmLQQnKiLKVIRKnLVkKcLelfneiAeedPdeEdK VVDSEDLPLNiSREmLQQ+KiLKVIRKn+VkKcLelf e+A EdK bm05352 408 VVDSEDLPLNISREMLQQSKILKVIRKNIVKKCLELFSELA------EDK 451 enYkkFYeeFsKNiKLGihEDaaNRakLAkLLRFeStkSgdeltSLkdYV enYkkFYe+FsKN+KLGihED++NR +L++LLR+++++Sgde+tSL +YV bm05352 452 ENYKKFYEAFSKNLKLGIHEDSTNRRRLSELLRYHTSQSGDEMTSLSEYV 501 tRMKegQkdIYYITGeSKkqvekSPFlErLkkKgyEVlymtdPiDEYaiq +RMKe Qk+IYYITGeSK+qv++S+F+Er++k+g+EV+ymt+PiDEY++q bm05352 502 SRMKETQKSIYYITGESKEQVANSAFVERVRKRGFEVVYMTEPIDEYCVQ 551 qLkEFEGKkLvnvTKEGLeLeEsEeeKkkrEelkkefEeLckwmKeaiLg qLkEF+GK Lv+vTKEGLeL+E+EeeKkk Ee k++fE+Lck+mKe iL+ bm05352 552 QLKEFDGKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKE-ILD 600 dkVEKVvVSnRLvdSPCalvTSqYGWSANMERIMKAQALrDsSmsaYmss +kVEKV++SnRLv SPC++vTS+YGW+ANMERIMKAQALrD+S+++Ym++ bm05352 601 KKVEKVTISNRLVSSPCCIVTSTYGWTANMERIMKAQALRDNSTMGYMMA 650 KKtlEINPrhPIIkeLrkrveaDknDktVKDLvvLLyeTALLtSGFsLed KK+lEINP+hPI+++Lr+++eaDknDk+VKDLvvLL+eTALL+SGFsLed bm05352 651 KKHLEINPDHPIVETLRQKAEADKNDKAVKDLVVLLFETALLSSGFSLED 700 PkafAsRIyRmiklGLsIDeDeeveeedeveeaeveetepaeedaedskm P+++ +RIyRmiklGL+IDeDe ++ee+ +a +e +p+e d+++s+m bm05352 701 PQTHSNRIYRMIKLGLGIDEDEVAAEEP--NAAVPDEIPPLEGDEDASRM 748 EevD<-* EevD bm05352 749 EEVD 752 //