hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-23430687/chunk_1/iprscan-20080807-23430687.nocrc
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Query sequence: bm05381
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01569.12.fs PAP2 superfamily                                56.5    3.3e-15   1
PF01569.12.ls PAP2 superfamily                                58.2    2.6e-14   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01569.12.fs   1/1     185   304 ..     1   177 []    56.5  3.3e-15
PF01569.12.ls   1/1     185   304 ..     1   177 []    58.2  2.6e-14

Alignments of top-scoring domains:
PF01569.12.fs: domain 1 of 1, from 185 to 304: score 56.5, E = 3.3e-15
                   *->aalalllalvaslllnglaylKllfgrpRApPhflavcqpdwgdstc
                       ++ lllal++  ++++    + l+   R+ P               
     bm05381   185    VLMNLLLALLLDIMTVAG--VQKLI--KRRGP--------------- 212  

                   sdlwyeellgyefycmagspgldridlfgsvlltsafalvseagpSFPSG
                                                  + +s  +  +   ++FP G
     bm05381   213 -----------------------------YEMSPSLLDYLTMDIYAFPAG 233  

                   HaafaaafalflalylprrlsklgrllrlllgllllllallvglSRvylg
                   Ha+ aa+++ f++ +l +           +l++ll+l+al+vglSRv+ g
     bm05381   234 HASRAAMVSKFFLSHLVL---------AVPLRVLLVLWALCVGLSRVMIG 274  

                   vHypsDVlaGallGaliaalvllfvrrlld<-*
                    H+ +DVl G+++G+l + lv l++ + +    
     bm05381   275 RHHVTDVLSGFVIGYLQFRLVELVWMPSST    304  

PF01569.12.ls: domain 1 of 1, from 185 to 304: score 58.2, E = 2.6e-14
                   *->aalalllalvaslllnglaylKllfgrpRApPhflavcqpdwgdstc
                       ++ lllal++  ++++    + l+   R+ P               
     bm05381   185    VLMNLLLALLLDIMTVAG--VQKLI--KRRGP--------------- 212  

                   sdlwyeellgyefycmagspgldridlfgsvlltsafalvseagpSFPSG
                                                  + +s  +  +   ++FP G
     bm05381   213 -----------------------------YEMSPSLLDYLTMDIYAFPAG 233  

                   HaafaaafalflalylprrlsklgrllrlllgllllllallvglSRvylg
                   Ha+ aa+++ f++ +l +           +l++ll+l+al+vglSRv+ g
     bm05381   234 HASRAAMVSKFFLSHLVL---------AVPLRVLLVLWALCVGLSRVMIG 274  

                   vHypsDVlaGallGaliaalvllfvrrlld<-*
                    H+ +DVl G+++G+l + lv l++ + +    
     bm05381   275 RHHVTDVLSGFVIGYLQFRLVELVWMPSST    304  

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