hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20090618/iprscan-20090618-01023541/chunk_1/iprscan-20090618-01023541.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm05442 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00441.14.ls Acyl-CoA dehydrogenase, C-terminal doma 174.0 3.5e-49 1 PF00441.14.fs Acyl-CoA dehydrogenase, C-terminal doma 172.6 8.9e-49 1 PF02770.9.fs Acyl-CoA dehydrogenase, middle domain 87.5 2.8e-24 1 PF02770.9.ls Acyl-CoA dehydrogenase, middle domain 89.4 1e-23 1 PF02771.7.fs Acyl-CoA dehydrogenase, N-terminal doma 54.0 2.1e-14 1 PF02771.7.ls Acyl-CoA dehydrogenase, N-terminal doma 55.5 1.7e-13 1 PF08028.2.ls Acyl-CoA dehydrogenase, C-terminal doma 14.3 2.7e-05 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02771.7.ls 1/1 120 234 .. 1 128 [] 55.5 1.7e-13 PF02771.7.fs 1/1 158 234 .. 43 128 .] 54.0 2.1e-14 PF02770.9.fs 1/1 238 291 .. 1 60 [] 87.5 2.8e-24 PF02770.9.ls 1/1 238 291 .. 1 60 [] 89.4 1e-23 PF00441.14.ls 1/1 352 502 .. 1 156 [] 174.0 3.5e-49 PF00441.14.fs 1/1 352 498 .. 1 152 [. 172.6 8.9e-49 PF08028.2.ls 1/1 367 491 .. 1 139 [] 14.3 2.7e-05 Alignments of top-scoring domains: PF02771.7.ls: domain 1 of 1, from 120 to 234: score 55.5, E = 1.7e-13 *->seEqemlratvREkFAqeEiaPyaaeGRRvDktsefpalrel....i +eEq ++++ + e + + ++e v + ++ +al+ ++++++ bm05442 120 NEEQTQFLKELV-----EPVSRFFEE---VNDPAKNDALEMVeettW 158 kaLgklGLlgihvPEeyRGGaGadylaRFmLHAQVaalviEElarvcAst ++L +lG g+ vP e+ GG G+ +a +E +++ + ++ bm05442 159 QGLKELGAFGLQVPSEL-GGVGLCNTQ--------YARLVEIVGMHDLGV 199 gvilsvhssLgqnpilkfGseEQKkkyLPqltsGe<-* g +l++h s+g+ +il fG+++QK+kyLP+l+sGe bm05442 200 GITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGE 234 PF02771.7.fs: domain 1 of 1, from 158 to 234: score 54.0, E = 2.1e-14 *->ikaLgklGLlgihvPEeyRGGaGadylaRFmLHAQVaalviEElarv +++L +lG g+ vP e+ GG G+ +a +E +++ bm05442 158 WQGLKELGAFGLQVPSEL-GGVGLCNTQ--------YARLVEIVGMH 195 cAstgvilsvhssLgqnpilkfGseEQKkkyLPqltsGe<-* + ++g +l++h s+g+ +il fG+++QK+kyLP+l+sGe bm05442 196 DLGVGITLGAHQSIGFKGILLFGTKAQKEKYLPKLASGE 234 PF02770.9.fs: domain 1 of 1, from 238 to 291: score 87.5, E = 2.8e-24 *->afalTEPgaGSDaaalrTtiAvrdd..GdddhyvlNTPGsKiwItna af+lTEP +GSDaa++rT Av+ + G y lN GsK wI+n+ bm05442 238 AFCLTEPSSGSDAASIRTS-AVP-SpcG--KYYTLN--GSKLWISNG 278 gpvADvfiVlArlTd<-* g AD+f+V+A+ T bm05442 279 G-LADIFTVFAK-TP 291 PF02770.9.ls: domain 1 of 1, from 238 to 291: score 89.4, E = 1e-23 *->afalTEPgaGSDaaalrTtiAvrdd..GdddhyvlNTPGsKiwItna af+lTEP +GSDaa++rT Av+ + G y lN GsK wI+n+ bm05442 238 AFCLTEPSSGSDAASIRTS-AVP-SpcG--KYYTLN--GSKLWISNG 278 gpvADvfiVlArlTd<-* g AD+f+V+A+ T bm05442 279 G-LADIFTVFAK-TP 291 PF00441.14.ls: domain 1 of 1, from 352 to 502: score 174.0, E = 3.5e-49 *->grGfrvametvlnheRlaiaagalGlarraleeaveYarqRkaFGrp g+Gf+vam ln++R+++aa+ +G +r + av++a +R++FG + bm05442 352 GSGFKVAMHI-LNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEK 397 ladfqlirhkLAemaaeleaaRllvyraAellldagkpdevpaeasmaKl + f li++kLA+m + +++y + + +d+g+ d +ea++ K+ bm05442 398 IHNFGLIQEKLARMVMLQYVTESMAYMVSA-NMDQGATD-FQIEAAISKI 445 faselaqevaddAmQilGgyGyesreyprveRlyRdarvlrIgeGTsEiq f+se+a++v+d+++Qi+Gg+G+ ++e + veR +Rd r++rI+eGT++i+ bm05442 446 FGSEAAWKVTDECIQIMGGMGF-MKEPG-VERVLRDLRIFRIFEGTNDIL 493 rniIArrll<-* r+ +A + bm05442 494 RLFVALQGC 502 PF00441.14.fs: domain 1 of 1, from 352 to 498: score 172.6, E = 8.9e-49 *->grGfrvametvlnheRlaiaagalGlarraleeaveYarqRkaFGrp g+Gf+vam ln++R+++aa+ +G +r + av++a +R++FG + bm05442 352 GSGFKVAMHI-LNNGRFGMAAALAGTMRGIIAKAVDHATNRTQFGEK 397 ladfqlirhkLAemaaeleaaRllvyraAellldagkpdevpaeasmaKl + f li++kLA+m + +++y + + +d+g+ d +ea++ K+ bm05442 398 IHNFGLIQEKLARMVMLQYVTESMAYMVSA-NMDQGATD-FQIEAAISKI 445 faselaqevaddAmQilGgyGyesreyprveRlyRdarvlrIgeGTsEiq f+se+a++v+d+++Qi+Gg+G+ ++e + veR +Rd r++rI+eGT++i+ bm05442 446 FGSEAAWKVTDECIQIMGGMGF-MKEPG-VERVLRDLRIFRIFEGTNDIL 493 rniIA<-* r+ +A bm05442 494 RLFVA 498 PF08028.2.ls: domain 1 of 1, from 367 to 491: score 14.3, E = 2.7e-05 *->lgfaapaLGaArgALaafierareRvrataysgaplaedpatqtrLA g aa++ G rg +a ++++a++R++ +g+++ + +q +LA bm05442 367 FGMAAALAGTMRGIIAKAVDHATNRTQ----FGEKIHNFGLIQEKLA 409 eAaae...idAArllleraadriwahadrGaevPtpeerargrrdavaal ++ + + + ++ ++ ++ d+ ++ ++ +++ +++ bm05442 410 RMVMLqyvTESMAYMVSANMDQ----GATDFQI-------EAAIS--KIF 446 AaelavaavdrlfraaGgsalfkdsPlQRfwRDahaaasHaaldp<-* e+a ++d++ + +Gg + +k+ ++R RD+++ ++ ++++ bm05442 447 GSEAAWKVTDECIQIMGGMGFMKEPGVERVLRDLRIFRIFEGTND 491 //