hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080807/iprscan-20080807-23555601/chunk_1/iprscan-20080807-23555601.nocrc
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Query sequence: bm05503
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00646.23.fs F-box domain                                    26.9    3.9e-06   1
PF00646.23.ls F-box domain                                    28.9    1.6e-05   1
PF07719.7.ls Tetratricopeptide repeat                        20.7     0.0048   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF07719.7.ls   1/1     201   234 ..     1    34 []    20.7   0.0048
PF00646.23.fs   1/1     293   345 ..     1    46 []    26.9  3.9e-06
PF00646.23.ls   1/1     293   345 ..     1    46 []    28.9  1.6e-05

Alignments of top-scoring domains:
PF07719.7.ls: domain 1 of 1, from 201 to 234: score 20.7, E = 0.0048
                   *->aealynlGlayyklgdyeeAleayekAleldPnn<-*
                      a+ l++ ++  +++g + eA+++y++A +l P+    
     bm05503   201    ARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDI    234  

PF00646.23.fs: domain 1 of 1, from 293 to 345: score 26.9, E = 3.9e-06
                   *->fslldLPdellleIlsrLdpkd.....llrlslVSkrwrslvdsl.l
                       +++ LP e+l+ I++++   d + ++l +lslV++ ++ +++++++
     bm05503   293    IHISVLPMEVLMYIFRWVVSSDldlrsLEQLSLVCRGFYICARDPeI 339  

                   wk.kll<-*
                   w+  +l   
     bm05503   340 WRlACL    345  

PF00646.23.ls: domain 1 of 1, from 293 to 345: score 28.9, E = 1.6e-05
                   *->fslldLPdellleIlsrLdpkd.....llrlslVSkrwrslvdsl.l
                       +++ LP e+l+ I++++   d + ++l +lslV++ ++ +++++++
     bm05503   293    IHISVLPMEVLMYIFRWVVSSDldlrsLEQLSLVCRGFYICARDPeI 339  

                   wk.kll<-*
                   w+  +l   
     bm05503   340 WRlACL    345  

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