hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-12065618/chunk_1/iprscan-20090525-12065618.nocrc
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Query sequence: bm05505
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01661.11.ls Appr-1-p processing enzyme family              110.8    3.6e-30   1
PF01661.11.fs Appr-1-p processing enzyme family              108.9    4.9e-30   1
PF00125.14.fs Core histone H2A/H2B/H3/H4                      95.9    1.3e-26   1
PF00125.14.ls Core histone H2A/H2B/H3/H4                      97.9    2.8e-26   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00125.14.fs   1/1      17    90 ..     1    75 []    95.9  1.3e-26
PF00125.14.ls   1/1      17    90 ..     1    75 []    97.9  2.8e-26
PF01661.11.fs   1/1     218   332 ..     1   125 []   108.9  4.9e-30
PF01661.11.ls   1/1     218   332 ..     1   125 []   110.8  3.6e-30

Alignments of top-scoring domains:
PF00125.14.fs: domain 1 of 1, from 17 to 90: score 95.9, E = 1.3e-26
                   *->strllilklpfsRvvRelkegfyaelRisskAmvalqealEdlleei
                      ++++++  +p++R++R+lk+g+  + Ris +A+v++++++E+l +ei
     bm05505    17    RSARAGVIFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEI 62   

                   ledAgllarhakRvTitprDiqlAvRld<-*
                   le+Ag++ar++k+ +i pr+i lAv +d   
     bm05505    63 LELAGNAARDNKKARIAPRHILLAVAND    90   

PF00125.14.ls: domain 1 of 1, from 17 to 90: score 97.9, E = 2.8e-26
                   *->strllilklpfsRvvRelkegfyaelRisskAmvalqealEdlleei
                      ++++++  +p++R++R+lk+g+  + Ris +A+v++++++E+l +ei
     bm05505    17    RSARAGVIFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEI 62   

                   ledAgllarhakRvTitprDiqlAvRld<-*
                   le+Ag++ar++k+ +i pr+i lAv +d   
     bm05505    63 LELAGNAARDNKKARIAPRHILLAVAND    90   

PF01661.11.fs: domain 1 of 1, from 218 to 332: score 108.9, E = 4.9e-30
                   *->VNAANssLlgcfpGGGVagAIhraaGpeLleecrelikkqggsdecp
                      V+++            + +A+ +a+G+e+le  +el+k qg+   ++
     bm05505   218    VHPTTAEIDL---KEDIGKALEKAGGKEFLETVKELRKSQGP---LE 258  

                   tGeAviTpggnLpakyVIHtVGPiwrggfggeeeeelLasaYrnsLelAe
                   + eA++  +  L ak+VIH+  P w    g++ +ee+L++ ++n+L  Ae
     bm05505   259 VAEAAVSQSSGLAAKFVIHCHIPQW----GSDKCEEQLEETIKNCLSAAE 304  

                   elglksiAfPaISTGiyGfPkeeaaeia<-*
                   +++lks+AfP+  +G  +fPk++aa++    
     bm05505   305 DKKLKSVAFPPFPSGRNCFPKQTAAQVT    332  

PF01661.11.ls: domain 1 of 1, from 218 to 332: score 110.8, E = 3.6e-30
                   *->VNAANssLlgcfpGGGVagAIhraaGpeLleecrelikkqggsdecp
                      V+++            + +A+ +a+G+e+le  +el+k qg+   ++
     bm05505   218    VHPTTAEIDL---KEDIGKALEKAGGKEFLETVKELRKSQGP---LE 258  

                   tGeAviTpggnLpakyVIHtVGPiwrggfggeeeeelLasaYrnsLelAe
                   + eA++  +  L ak+VIH+  P w    g++ +ee+L++ ++n+L  Ae
     bm05505   259 VAEAAVSQSSGLAAKFVIHCHIPQW----GSDKCEEQLEETIKNCLSAAE 304  

                   elglksiAfPaISTGiyGfPkeeaaeia<-*
                   +++lks+AfP+  +G  +fPk++aa++    
     bm05505   305 DKKLKSVAFPPFPSGRNCFPKQTAAQVT    332  

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