hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20090525/iprscan-20090525-12065618/chunk_1/iprscan-20090525-12065618.nocrc
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Query sequence: bm05505
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00414                                                 241.4    7.8e-68   1
SM00506                                                  74.2    1.6e-17   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00414     1/1       2   122 ..     1   124 []   241.4  7.8e-68
SM00506     1/1     198   332 ..     1   156 []    74.2  1.6e-17

Alignments of top-scoring domains:
SM00414: domain 1 of 1, from 2 to 122: score 241.4, E = 7.8e-68
                   *->gkgakgkkkkkksvsrSarAGLqFPVGRihRlLrkgtyakRvGagAp
                      ++++ ++kkk ++ srSarAG +FPVGR  R+L+kgt   R++ gAp
     bm05505     2    KMSGRSGKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAP 48   

                   VYlAAVLEYLTAEvLELAgnAArdngkKkkRItPRhlqLAvrnDeeLnkL
                   VY+AAV+EYL+AE+LELAgnAArdn  Kk RI PRh++LAv+nDeeLn+L
     bm05505    49 VYMAAVIEYLAAEILELAGNAARDN--KKARIAPRHILLAVANDEELNQL 96   

                   lkgVTIasGGVlPsnInkvLlpKktkk<-*
                   lkgVTIasGGVlP  I++ Ll Kk+++   
     bm05505    97 LKGVTIASGGVLP-RIHPELLAKKRGT    122  

SM00506: domain 1 of 1, from 198 to 332: score 74.2, E = 1.6e-17
                   *->ilkvvkGDItklr...adaIVNAANsrllhGgGgvagAiaraaggpc
                      +l++++ DI++  + +++ IV+++     ++   +++A+ +a+g ++
     bm05505   198    KLSLTQSDISHIGsmrVEGIVHPTTAEIDLKED-IGKALEKAGG-KE 242  

                   weeekeefrkqaggepLqlgecpvGtavvteggnlpentkrgkakyVIHa
                   + e  +e+rk +g         +v++a v+ + +l        ak+VIH+
     bm05505   243 FLETVKELRKSQG-------PLEVAEAAVSQSSGL-------AAKFVIHC 278  

                   vGPeasgynnkkgseegdellenAyranclrlaeelgiksvaiPlIstGi
                     P ++       s  ++e le+ +++ cl  ae++++ksva+P + +G 
     bm05505   279 HIPQWG-------SDKCEEQLEETIKN-CLSAAEDKKLKSVAFPPFPSGR 320  

                   ygvpkdrvaqal<-*
                     +pk ++aq+    
     bm05505   321 NCFPKQTAAQVT    332  

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