hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080808/iprscan-20080808-00021514/chunk_1/iprscan-20080808-00021514.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: bm05522 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00515.18.ls Tetratricopeptide repeat 201.6 1.8e-57 8 PF07719.7.ls Tetratricopeptide repeat 188.3 1.7e-53 9 PF00515.18.fs Tetratricopeptide repeat 186.8 4.9e-53 8 PF07719.7.fs Tetratricopeptide repeat 174.7 2.1e-49 9 PF00226.21.fs DnaJ domain 119.7 5.8e-35 1 PF00226.21.ls DnaJ domain 121.6 2.1e-33 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00515.18.ls 1/8 17 50 .. 1 34 [] 36.4 9e-08 PF07719.7.ls 1/9 17 50 .. 1 34 [] 33.4 7.2e-07 PF00515.18.fs 1/8 17 50 .. 1 34 [] 34.4 8.6e-09 PF07719.7.fs 1/9 17 50 .. 1 34 [] 31.4 9e-08 PF00515.18.fs 2/8 51 84 .. 1 34 [] 22.8 1.8e-05 PF00515.18.ls 2/8 51 84 .. 1 34 [] 24.8 0.00029 PF07719.7.ls 2/9 51 84 .. 1 34 [] 22.3 0.0016 PF00515.18.fs 3/8 85 118 .. 1 34 [] 17.8 0.00046 PF00515.18.ls 3/8 85 118 .. 1 34 [] 19.8 0.009 PF00515.18.fs 5/8 199 232 .. 1 34 [] 28.9 3.3e-07 PF07719.7.ls 6/9 199 232 .. 1 34 [] 29.8 9.2e-06 PF07719.7.fs 6/9 199 232 .. 1 34 [] 27.7 9.6e-07 PF00515.18.ls 5/8 199 232 .. 1 34 [] 30.9 4.2e-06 PF00515.18.ls 6/8 245 278 .. 1 34 [] 22.0 0.0019 PF00515.18.fs 6/8 252 278 .. 8 34 .] 21.3 4.8e-05 PF00515.18.fs 7/8 283 316 .. 1 34 [] 34.4 8.6e-09 PF00515.18.ls 7/8 283 316 .. 1 34 [] 36.4 9e-08 PF07719.7.ls 8/9 283 316 .. 1 34 [] 22.9 0.0011 PF00515.18.fs 8/8 317 350 .. 1 34 [] 26.6 1.4e-06 PF00515.18.ls 8/8 317 350 .. 1 34 [] 28.6 2e-05 PF07719.7.ls 9/9 317 350 .. 1 34 [] 26.4 9.5e-05 PF00226.21.fs 1/1 370 437 .. 1 76 [] 119.7 5.8e-35 PF00226.21.ls 1/1 370 437 .. 1 76 [] 121.6 2.1e-33 Alignments of top-scoring domains: PF00515.18.ls: domain 1 of 8, from 17 to 50: score 36.4, E = 9e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae+++ Gnay+++++y+eA +y+kA+++ P+n bm05522 17 AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKN 50 PF07719.7.ls: domain 1 of 9, from 17 to 50: score 33.4, E = 7.2e-07 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ae +G+ayy+++dy eA ++y kA++ P+n bm05522 17 AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKN 50 PF00515.18.fs: domain 1 of 8, from 17 to 50: score 34.4, E = 8.6e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ae+++ Gnay+++++y+eA +y+kA+++ P+n bm05522 17 AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKN 50 PF07719.7.fs: domain 1 of 9, from 17 to 50: score 31.4, E = 9e-08 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* ae +G+ayy+++dy eA ++y kA++ P+n bm05522 17 AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKN 50 PF00515.18.fs: domain 2 of 8, from 51 to 84: score 22.8, E = 1.8e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a y n++++++ lg++ eA+ + ++ ++ld ++ bm05522 51 ASYYGNRAATLMMLGRFREALGDAQQSVRLDDSF 84 PF00515.18.ls: domain 2 of 8, from 51 to 84: score 24.8, E = 0.00029 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a y n++++++ lg++ eA+ + ++ ++ld ++ bm05522 51 ASYYGNRAATLMMLGRFREALGDAQQSVRLDDSF 84 PF07719.7.ls: domain 2 of 9, from 51 to 84: score 22.3, E = 0.0016 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a ++ n++ ++ lg++ eAl + +++++ld + bm05522 51 ASYYGNRAATLMMLGRFREALGDAQQSVRLDDSF 84 PF00515.18.fs: domain 3 of 8, from 85 to 118: score 17.8, E = 0.00046 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ + + G ++l+lg+ +A +++ALeld +n bm05522 85 VRGHLREGKCHLSLGNAMAACRSFQRALELDHKN 118 PF00515.18.ls: domain 3 of 8, from 85 to 118: score 19.8, E = 0.009 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* ++ + + G ++l+lg+ +A +++ALeld +n bm05522 85 VRGHLREGKCHLSLGNAMAACRSFQRALELDHKN 118 PF00515.18.fs: domain 5 of 8, from 199 to 232: score 28.9, E = 3.3e-07 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a+y +G++++ ++A++++ +AL++ P++ bm05522 199 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH 232 PF07719.7.ls: domain 6 of 9, from 199 to 232: score 29.8, E = 9.2e-06 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+aly +Gl++y+ e+A++++ +Al+ +P++ bm05522 199 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH 232 PF07719.7.fs: domain 6 of 9, from 199 to 232: score 27.7, E = 9.6e-07 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a+aly +Gl++y+ e+A++++ +Al+ +P++ bm05522 199 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH 232 PF00515.18.ls: domain 5 of 8, from 199 to 232: score 30.9, E = 4.2e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+a+y +G++++ ++A++++ +AL++ P++ bm05522 199 ADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH 232 PF00515.18.ls: domain 6 of 8, from 245 to 278: score 22.0, E = 0.0019 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +a + Gn +k g+y+ A e y++AL +dPnn bm05522 245 LKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNN 278 PF00515.18.fs: domain 6 of 8, from 252 to 278: score 21.3, E = 4.8e-05 *->GnaylklgkydeAieayekALeldPnn<-* Gn +k g+y+ A e y++AL +dPnn bm05522 252 GNKAFKEGNYKLAYELYTEALGIDPNN 278 PF00515.18.fs: domain 7 of 8, from 283 to 316: score 34.4, E = 8.6e-09 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ y+n+G + kl k+d+Aie+++ A++ld ++ bm05522 283 AKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTY 316 PF00515.18.ls: domain 7 of 8, from 283 to 316: score 36.4, E = 9e-08 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* a+ y+n+G + kl k+d+Aie+++ A++ld ++ bm05522 283 AKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTY 316 PF07719.7.ls: domain 8 of 9, from 283 to 316: score 22.9, E = 0.0011 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* a++++n+G + kl+++++A+e++ A++ld ++ bm05522 283 AKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTY 316 PF00515.18.fs: domain 8 of 8, from 317 to 350: score 26.6, E = 1.4e-06 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +ay +++++y+ ++y+eA+ +yek+ + + + bm05522 317 IKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTK 350 PF00515.18.ls: domain 8 of 8, from 317 to 350: score 28.6, E = 2e-05 *->aeayynlGnaylklgkydeAieayekALeldPnn<-* +ay +++++y+ ++y+eA+ +yek+ + + + bm05522 317 IKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTK 350 PF07719.7.ls: domain 9 of 9, from 317 to 350: score 26.4, E = 9.5e-05 *->aealynlGlayyklgdyeeAleayekAleldPnn<-* +a+ +++++y+ ++yeeA+++yek+ + +++ bm05522 317 IKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTK 350 PF00226.21.fs: domain 1 of 1, from 370 to 437: score 119.7, E = 5.8e-35 *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae dyY+iLGv+++As++eIKKAYRk Al++HPD+++g + + bm05522 370 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGAS---------A 407 .skeeAeekFkeineAYevLSDpekRaiYD<-* ++++e e+kFke++eA+ +LSDp+k+ +YD bm05522 408 eVQKEEEKKFKEVGEAFTILSDPKKKTRYD 437 PF00226.21.ls: domain 1 of 1, from 370 to 437: score 121.6, E = 2.1e-33 *->dyYeiLGvprdAsdeeIKKAYRkLAlkyHPDKNpgdpeerktnerae dyY+iLGv+++As++eIKKAYRk Al++HPD+++g + + bm05522 370 DYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGAS---------A 407 .skeeAeekFkeineAYevLSDpekRaiYD<-* ++++e e+kFke++eA+ +LSDp+k+ +YD bm05522 408 eVQKEEEKKFKEVGEAFTILSDPKKKTRYD 437 //