hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00021514/chunk_1/iprscan-20080808-00021514.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05522
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00028                                                 203.1    2.6e-56   8
SM00271                                                 112.4      5e-29   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00028    1/8      17    50 ..     1    34 []    39.1  6.1e-07
SM00028    2/8      51    84 ..     1    34 []    24.5    0.015
SM00028    3/8      85   118 ..     1    34 []    19.3     0.54
SM00028    4/8     165   198 ..     1    34 []     3.5    2e+02
SM00028    5/8     199   232 ..     1    34 []    30.1  0.00031
SM00028    6/8     245   278 ..     1    34 []    24.5    0.015
SM00028    7/8     283   316 ..     1    34 []    33.9  2.2e-05
SM00028    8/8     317   350 ..     1    34 []    28.2   0.0011
SM00271    1/1     369   432 ..     1    72 []   112.4    5e-29

Alignments of top-scoring domains:
SM00028: domain 1 of 8, from 17 to 50: score 39.1, E = 6.1e-07
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ae+++ +Gnay++++dy+eA +yy+kA+++ P+n   
     bm05522    17    AETFKEQGNAYYAKKDYNEAYNYYTKAIDMCPKN    50   

SM00028: domain 2 of 8, from 51 to 84: score 24.5, E = 0.015
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a ++ n++  ++ lg++ eA+ + +++++ld ++   
     bm05522    51    ASYYGNRAATLMMLGRFREALGDAQQSVRLDDSF    84   

SM00028: domain 3 of 8, from 85 to 118: score 19.3, E = 0.54
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++ +++ G ++l+lg+   A   +++ALeld +n   
     bm05522    85    VRGHLREGKCHLSLGNAMAACRSFQRALELDHKN    118  

SM00028: domain 4 of 8, from 165 to 198: score 3.5, E = 2e+02
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       +    +++++  lg+y eA    +  L++d +n   
     bm05522   165    HRFKILKAECLAMLGRYPEAQSVASDILRMDSTN    198  

SM00028: domain 5 of 8, from 199 to 232: score 30.1, E = 0.00031
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+aly +G++++    +++A++++ +AL+++P++   
     bm05522   199    ADALYVRGLCLYYEDCIEKAVQFFVQALRMAPDH    232  

SM00028: domain 6 of 8, from 245 to 278: score 24.5, E = 0.015
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                       +a +  Gn  +k g+y+ A e y++AL +dPnn   
     bm05522   245    LKAKKEDGNKAFKEGNYKLAYELYTEALGIDPNN    278  

SM00028: domain 7 of 8, from 283 to 316: score 33.9, E = 2.2e-05
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      a+ ++n+G +  kl ++d+Aie+++ A++ld ++   
     bm05522   283    AKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTY    316  

SM00028: domain 8 of 8, from 317 to 350: score 28.2, E = 0.0011
                   *->aealynlGnaylklgdydeAieyyekALeldPnn<-*
                      ++a+++++++y+  ++y+eA+ +yek+ + + +    
     bm05522   317    IKAYLRRAQCYMDTEQYEEAVRDYEKVYQTEKTK    350  

SM00271: domain 1 of 1, from 369 to 432: score 112.4, E = 5e-29
                   *->tdyYeiLGvskdAsddeIKKAYRkLAlkyHPDKnpgdpelseeklpe
                      +dyY+iLGv+k+As+deIKKAYRk Al++HPD+++g ++        
     bm05522   369    KDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASA-------- 407  

                   eekeeAeekFkeIneAYevLsDpek<-*
                   e+++e e+kFke+ eA+ +LsDp+k   
     bm05522   408 EVQKEEEKKFKEVGEAFTILSDPKK    432  

//