hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00090154/chunk_1/iprscan-20080808-00090154.nocrc
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Query sequence: bm05530
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00022.9.fs Actin                                          829.2   7.8e-259   1
PF00022.9.ls Actin                                          831.0   5.8e-247   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00022.9.fs   1/1      23   396 .]     1   499 []   829.2 7.8e-259
PF00022.9.ls   1/1      23   396 .]     1   499 []   831.0 5.8e-247

Alignments of top-scoring domains:
PF00022.9.fs: domain 1 of 1, from 23 to 396: score 829.2, E = 7.8e-259
                   *->gdevsAlViDnGsgttraGFAGEDaPkaviPsvvGlaGtprprgtgv
                       d++ AlV+DnGsg+++aGFAG+DaP+av+Ps+vG     rpr++gv
     bm05530    23    DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG-----RPRHQGV 64   

                   evvdgegaeenkrkyyvGdelialsvpDrpgmevrnPiedGivedWDame
                   +v++g++      + yvGde  a+s + r+++++++Pie+Giv++WD+me
     bm05530    65 MVGMGQK------DSYVGDE--AQS-K-RGILTLKYPIEHGIVTNWDDME 104  

                   kiWehvffeeLqvnPEKPLeehPlLlTEppwNppanREKatEimFEkfnv
                   kiW+h+f++eL+v+P    eehP+LlTE+p+Np+anREK+t+imFE+fn+
     bm05530   105 KIWHHTFYNELRVAP----EEHPVLLTEAPLNPKANREKMTQIMFETFNT 150  

                   PAlylaknaVLsafAsGrtFSvsraQtgLVvDsGagvTsVvPVyeGyvLq
                   PA+y+a++aVLs++AsGrt       tg+V+DsG+gvT+ vP+yeGy+L+
     bm05530   151 PAMYVAIQAVLSLYASGRT-------TGIVMDSGDGVTHTVPIYEGYALP 193  

                   kairrsplaGddLtdqlrklLrsrknvevtPryliksKepveegqpasft
                   +ai r++laG+dLtd+l+k+L++                           
     bm05530   194 HAILRLDLAGRDLTDYLMKILTE--------------------------- 216  

                   lrlpdvTeleGySyktyqeeevleeiKEsvCyVsddpfgdledeeaaseg
                            +GyS++t++e+e++++iKE++CyV++d+++++  ++a+s  
     bm05530   217 ---------RGYSFTTTAEREIVRDIKEKLCYVALDFEQEM-ATAASS-- 254  

                   ikrneersgsiptvsEvYeLPDGTkkGfvrdldLyqatiifGaeRFrvPE
                            s++++s  YeLPDG           +  +i++G+eRFr+PE
     bm05530   255 ---------SSLEKS--YELPDG-----------Q--VITIGNERFRCPE 280  

                   iLFdPsligsesalnppnttkvevteqstvlqqktllfmGipeliydsin
                   +LF+Ps++g+es                           Gi+e++++si+
     bm05530   281 ALFQPSFLGMESC--------------------------GIHETTFNSIM 304  

                   acDvDlRpsLlaNiVvtGGtsLlpGfteRLekElaqlyklappgvisqkv
                   +cDvD+R++L+aN V++GGt+++pG+++R++kE+++l   ap+++   k+
     bm05530   305 KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL---APSTM---KI 348  

                   kiiAppttvERkysaWiGGSILASLgtFqqmWvSKqEYeEhGssriVerk
                   kiiApp   ERkys+WiGGSILASL+tFqqmW+SKqEY+E G+s iV+rk
     bm05530   349 KIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS-IVHRK 394  

                   Ck<-*
                   C+   
     bm05530   395 CF    396  

PF00022.9.ls: domain 1 of 1, from 23 to 396: score 831.0, E = 5.8e-247
                   *->gdevsAlViDnGsgttraGFAGEDaPkaviPsvvGlaGtprprgtgv
                       d++ AlV+DnGsg+++aGFAG+DaP+av+Ps+vG     rpr++gv
     bm05530    23    DDDIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG-----RPRHQGV 64   

                   evvdgegaeenkrkyyvGdelialsvpDrpgmevrnPiedGivedWDame
                   +v++g++      + yvGde  a+s + r+++++++Pie+Giv++WD+me
     bm05530    65 MVGMGQK------DSYVGDE--AQS-K-RGILTLKYPIEHGIVTNWDDME 104  

                   kiWehvffeeLqvnPEKPLeehPlLlTEppwNppanREKatEimFEkfnv
                   kiW+h+f++eL+v+P    eehP+LlTE+p+Np+anREK+t+imFE+fn+
     bm05530   105 KIWHHTFYNELRVAP----EEHPVLLTEAPLNPKANREKMTQIMFETFNT 150  

                   PAlylaknaVLsafAsGrtFSvsraQtgLVvDsGagvTsVvPVyeGyvLq
                   PA+y+a++aVLs++AsGrt       tg+V+DsG+gvT+ vP+yeGy+L+
     bm05530   151 PAMYVAIQAVLSLYASGRT-------TGIVMDSGDGVTHTVPIYEGYALP 193  

                   kairrsplaGddLtdqlrklLrsrknvevtPryliksKepveegqpasft
                   +ai r++laG+dLtd+l+k+L++                           
     bm05530   194 HAILRLDLAGRDLTDYLMKILTE--------------------------- 216  

                   lrlpdvTeleGySyktyqeeevleeiKEsvCyVsddpfgdledeeaaseg
                            +GyS++t++e+e++++iKE++CyV++d+++++  ++a+s  
     bm05530   217 ---------RGYSFTTTAEREIVRDIKEKLCYVALDFEQEM-ATAASS-- 254  

                   ikrneersgsiptvsEvYeLPDGTkkGfvrdldLyqatiifGaeRFrvPE
                            s++++s  YeLPDG           +  +i++G+eRFr+PE
     bm05530   255 ---------SSLEKS--YELPDG-----------Q--VITIGNERFRCPE 280  

                   iLFdPsligsesalnppnttkvevteqstvlqqktllfmGipeliydsin
                   +LF+Ps++g+es                           Gi+e++++si+
     bm05530   281 ALFQPSFLGMESC--------------------------GIHETTFNSIM 304  

                   acDvDlRpsLlaNiVvtGGtsLlpGfteRLekElaqlyklappgvisqkv
                   +cDvD+R++L+aN V++GGt+++pG+++R++kE+++l   ap+++   k+
     bm05530   305 KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL---APSTM---KI 348  

                   kiiAppttvERkysaWiGGSILASLgtFqqmWvSKqEYeEhGssriVerk
                   kiiApp   ERkys+WiGGSILASL+tFqqmW+SKqEY+E G+s iV+rk
     bm05530   349 KIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPS-IVHRK 394  

                   Ck<-*
                   C+   
     bm05530   395 CF    396  

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