hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080808/iprscan-20080808-00090154/chunk_1/iprscan-20080808-00090154.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: bm05530
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00268                                                 824.1   2.9e-243   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00268    1/1      26   396 .]     1   487 []   824.1 2.9e-243

Alignments of top-scoring domains:
SM00268: domain 1 of 1, from 26 to 396: score 824.1, E = 2.9e-243
                   *->npaiVIDnGSgtiKaGfagedsPrvvfPsivgrpkdgkgmvgsegsd
                       +a+V+DnGSg++KaGfag+d+Pr+vfPsivgrp+++++mvg   ++
     bm05530    26    IAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---MG 69   

                   kkdifvGdeallrqekRglpslelkyPiehGivenWDdmekiWdytffni
                   +kd +vGdea   q kRg+  l+lkyPiehGiv+nWDdmekiW++tf+n 
     bm05530    70 QKDSYVGDEA---QSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYN- 113  

                   deLrvepdgeehpvLLTEpplNpksnrekileimFEtfnfpalyvaiqAV
                    eLrv p  eehpvLLTE+plNpk+nrek+++imFEtfn pa+yvaiqAV
     bm05530   114 -ELRVAP--EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAV 160  

                   LslyasgiktsatsmgrttGlViDsGdgvThvvPVvdGyvlphaikRidi
                   Lslyas         grttG+V+DsGdgvTh+vP+++Gy+lphai R+d+
     bm05530   161 LSLYAS---------GRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 201  

                   AGrdlTdyLkelLselifemnsrgyafntsaefeivreiKEklcyVaedf
                   AGrdlTdyL+++L+e       rgy+f+t+ae+eivr+iKEklcyVa+df
     bm05530   202 AGRDLTDYLMKILTE-------RGYSFTTTAEREIVRDIKEKLCYVALDF 244  

                   ekemkkaressskessqeslviednlesqlpvsdskfdnetnsselektY
                   e+em++a +s                                 s lek+Y
     bm05530   245 EQEMATAASS---------------------------------SSLEKSY 261  

                   elPdGntikvGyVrpkkdeeqqqvihLanERFriPEiLFpisaskadasi
                   elPdG++i++G                 nERFr+PE+LF           
     bm05530   262 ELPDGQVITIG-----------------NERFRCPEALF----------- 283  

                   idklqdsPeligleqkkinelvGihelvyesIqkcDidvRkdLyeNIVls
                         +P+++g+e +      Gihe +++sI+kcD+d+RkdLy N Vls
     bm05530   284 ------QPSFLGMESC------GIHETTFNSIMKCDVDIRKDLYANTVLS 321  

                   GGstlipGfgeRLekELkqlaPsrllsekaklkklkvkviapperknays
                   GG+t++pG+++R++kE+++laP          +++k+k+iapperk  ys
     bm05530   322 GGTTMYPGIADRMQKEITALAP----------STMKIKIIAPPERK--YS 359  

                   vWlGGSiLAslstFedmwitkeEYeEsGpdraqivhrkcf<-*
                   vW+GGSiLAslstF++mwi+k+EY+EsG   ++ivhrkcf   
     bm05530   360 VWIGGSILASLSTFQQMWISKQEYDESG---PSIVHRKCF    396  

//