# /hgtech/tools/solaris8/bin/fasta34_t -T 8 -b50 -d10 -E0.01 -H -Obm05533.fasta.nr -Q bm05533.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 bm05533, 425 aa vs /cdna2/lib/nr/nr library 2355815254 residues in 6825066 sequences statistics sampled from 60000 to 6808954 sequences Expectation_n fit: rho(ln(x))= 6.4137+/-0.000205; mu= 5.9380+/- 0.011 mean_var=142.6644+/-27.736, 0's: 31 Z-trim: 95 B-trim: 351 in 1/65 Lambda= 0.107378 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(6825066) gi|31321970|gb|AAM44073.1| inhibitor of kappaB kin ( 487) 2795 444.4 2.3e-122 gi|6685695|sp|Q9Y6K9|NEMO_HUMAN NF-kappa-B essenti ( 419) 2742 436.1 6.3e-120 gi|3511151|gb|AAD12183.1| leucine zipper protein F ( 419) 2730 434.3 2.3e-119 gi|160213471|gb|ABX10999.1| inhibitor of kappa lig ( 419) 2716 432.1 1e-118 gi|167045831|gb|ABZ10499.1| inhibitor of kappa lig ( 419) 2634 419.4 6.8e-115 gi|170649646|gb|ACB21233.1| inhibitor of kappa lig ( 419) 2630 418.8 1e-114 gi|161137769|gb|ABX57883.1| inhibitor of kappa lig ( 419) 2421 386.4 5.8e-105 gi|184185511|gb|ACC68914.1| inhibitor of kappa lig ( 419) 2419 386.1 7.2e-105 gi|31321959|gb|AAM54725.1| inhibitor of kappaB kin ( 430) 2409 384.6 2.2e-104 gi|81864194|sp|Q6TMG5|NEMO_RAT NF-kappa-B essentia ( 412) 2396 382.5 8.4e-104 gi|126540891|emb|CAM45962.1| inhibitor of kappaB k ( 429) 2390 381.6 1.7e-103 gi|14579296|gb|AAK69186.1|AF326207_2 NFkB essentia ( 412) 2371 378.6 1.2e-102 gi|6093481|sp|O88522|NEMO_MOUSE NF-kappa-B essenti ( 412) 2363 377.4 2.9e-102 gi|18204761|gb|AAH21431.1| Ikbkg protein [Mus musc ( 411) 2352 375.7 9.5e-102 gi|166079195|gb|ABY81299.1| inhibitor of kappa lig ( 411) 2348 375.1 1.5e-101 gi|75057116|sp|Q95KU9|NEMO_BOVIN NF-kappa-B essent ( 419) 2338 373.5 4.3e-101 gi|59857871|gb|AAX08770.1| inhibitor of kappa ligh ( 419) 2333 372.8 7.4e-101 gi|59858045|gb|AAX08857.1| inhibitor of kappa ligh ( 418) 2301 367.8 2.3e-99 gi|114690724|ref|XP_001147259.1| PREDICTED: simila ( 424) 2296 367.0 4e-99 gi|190576578|gb|ACE79068.1| inhibitor of kappa lig ( 417) 2122 340.1 5.1e-91 gi|126342001|ref|XP_001374616.1| PREDICTED: simila ( 425) 2042 327.7 2.8e-87 gi|149638988|ref|XP_001505706.1| PREDICTED: simila ( 411) 1921 308.9 1.2e-81 gi|119593085|gb|EAW72679.1| inhibitor of kappa lig ( 285) 1834 295.3 1.1e-77 gi|74009189|ref|XP_855401.1| PREDICTED: similar to ( 285) 1688 272.7 6.8e-71 gi|194228464|ref|XP_001495506.2| PREDICTED: simila ( 462) 1508 245.0 2.4e-62 gi|126540896|emb|CAM45967.1| inhibitor of kappaB k ( 265) 1476 239.8 5e-61 gi|74195331|dbj|BAE28385.1| unnamed protein produc ( 265) 1472 239.2 7.7e-61 gi|126540899|emb|CAM45970.1| inhibitor of kappaB k ( 249) 1438 233.9 2.8e-59 gi|160213469|gb|ABX10997.1| inhibitor of kappa lig ( 216) 1411 229.6 4.7e-58 gi|126540898|emb|CAM45969.1| inhibitor of kappaB k ( 228) 1319 215.4 9.4e-54 gi|119593083|gb|EAW72677.1| inhibitor of kappa lig ( 234) 1313 214.5 1.8e-53 gi|149029852|gb|EDL84964.1| rCG43803 [Rattus norve ( 363) 1158 190.7 4.2e-46 gi|126540902|emb|CAM45973.1| inhibitor of kappaB k ( 190) 1052 174.0 2.3e-41 gi|119919955|ref|XP_001250182.1| PREDICTED: simila ( 208) 966 160.7 2.6e-37 gi|126540895|emb|CAM45966.1| inhibitor of kappaB k ( 141) 839 140.8 1.6e-31 gi|166797077|gb|AAI59401.1| Unknown (protein for M ( 506) 796 134.8 4e-29 gi|190613688|pdb|3CL3|D Chain D, Crystal Structure ( 130) 769 130.0 2.8e-28 gi|126540897|emb|CAM45968.1| inhibitor of kappaB k ( 126) 751 127.2 1.9e-27 gi|61403123|gb|AAH91725.1| MGC97885 protein [Xenop ( 495) 755 128.4 3.2e-27 gi|61403176|gb|AAH91829.1| Inhibitor of kappa ligh ( 586) 720 123.0 1.5e-25 gi|58220759|gb|AAW68011.1| NF-kappaB essential mod ( 602) 709 121.4 5.1e-25 gi|61402548|gb|AAH91820.1| Ikbkg protein [Danio re ( 506) 590 102.8 1.6e-19 gi|33416921|gb|AAH55628.1| Zgc:77868 protein [Dani ( 436) 556 97.5 5.6e-18 gi|148726110|emb|CAN88678.1| novel protein similar ( 517) 556 97.6 6.3e-18 gi|62287010|sp|Q5RI56|OPTN_BRARE Optineurin gi ( 517) 553 97.1 8.7e-18 gi|148726109|emb|CAN88677.1| novel protein similar ( 314) 545 95.7 1.5e-17 gi|55962760|emb|CAI11882.1| novel protein (zgc:778 ( 522) 548 96.3 1.5e-17 gi|73949042|ref|XP_857507.1| PREDICTED: similar to ( 579) 546 96.1 2e-17 gi|62287105|sp|Q8K3K8|OPTN_MOUSE Optineurin gi ( 584) 535 94.4 6.6e-17 gi|148676014|gb|EDL07961.1| optineurin, isoform CR ( 588) 535 94.4 6.6e-17 >>gi|31321970|gb|AAM44073.1| inhibitor of kappaB kinase (487 aa) initn: 2795 init1: 2795 opt: 2795 Z-score: 2351.8 bits: 444.4 E(): 2.3e-122 Smith-Waterman score: 2795; 100.000% identity (100.000% similar) in 424 aa overlap (2-425:64-487) 10 20 30 bm0553 QPLPCWMNRHLWKSQLCEMVQPSGGPAADQD :::::::::::::::::::::::::::::: gi|313 SSIIEVPSGGERCCSRRTLVYKARAFWKGAPLPCWMNRHLWKSQLCEMVQPSGGPAADQD 40 50 60 70 80 90 40 50 60 70 80 90 bm0553 VLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|313 VLGEESPLGKPAMLHLPSEQGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQAS 100 110 120 130 140 150 100 110 120 130 140 150 bm0553 QREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQQMAEDKASVKAQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|313 QREEKEFLMCKFQEARKLVERLGLEKLDLKRQKEQALREVEHLKRCQQQMAEDKASVKAQ 160 170 180 190 200 210 160 170 180 190 200 210 bm0553 VTSLLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|313 VTSLLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQ 220 230 240 250 260 270 220 230 240 250 260 270 bm0553 GQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQLEDLKQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|313 GQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQLEDLKQ 280 290 300 310 320 330 280 290 300 310 320 330 bm0553 QLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|313 QLQQAEEALVAKQEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEK 340 350 360 370 380 390 340 350 360 370 380 390 bm0553 KELLQEQLEQLQREYSKLKASCQESARIEDMRKRHVEVSQAPLPPAPAYLSSPLALPSQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|313 KELLQEQLEQLQREYSKLKASCQESARIEDMRKRHVEVSQAPLPPAPAYLSSPLALPSQR 400 410 420 430 440 450 400 410 420 bm0553 RSPPEEPPDFCCPKCQYQAPDMDTLQIHVMECIE :::::::::::::::::::::::::::::::::: gi|313 RSPPEEPPDFCCPKCQYQAPDMDTLQIHVMECIE 460 470 480 >>gi|6685695|sp|Q9Y6K9|NEMO_HUMAN NF-kappa-B essential m (419 aa) initn: 2742 init1: 2742 opt: 2742 Z-score: 2308.3 bits: 436.1 E(): 6.3e-120 Smith-Waterman score: 2742; 100.000% identity (100.000% similar) in 419 aa overlap (7-425:1-419) 10 20 30 40 50 60 bm0553 QPLPCWMNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|668 MNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC 10 20 30 40 50 70 80 90 100 110 120 bm0553 LEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|668 LEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDL 60 70 80 90 100 110 130 140 150 160 170 180 bm0553 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|668 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA 120 130 140 150 160 170 190 200 210 220 230 240 bm0553 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|668 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY 180 190 200 210 220 230 250 260 270 280 290 300 bm0553 HQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|668 HQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV 240 250 260 270 280 290 310 320 330 340 350 360 bm0553 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|668 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE 300 310 320 330 340 350 370 380 390 400 410 420 bm0553 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|668 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV 360 370 380 390 400 410 bm0553 MECIE ::::: gi|668 MECIE >>gi|3511151|gb|AAD12183.1| leucine zipper protein Fip3p (419 aa) initn: 2730 init1: 2730 opt: 2730 Z-score: 2298.2 bits: 434.3 E(): 2.3e-119 Smith-Waterman score: 2730; 99.523% identity (99.523% similar) in 419 aa overlap (7-425:1-419) 10 20 30 40 50 60 bm0553 QPLPCWMNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC :::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|351 MNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC 10 20 30 40 50 70 80 90 100 110 120 bm0553 LEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|351 LEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDL 60 70 80 90 100 110 130 140 150 160 170 180 bm0553 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|351 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA 120 130 140 150 160 170 190 200 210 220 230 240 bm0553 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|351 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY 180 190 200 210 220 230 250 260 270 280 290 300 bm0553 HQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|351 HQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV 240 250 260 270 280 290 310 320 330 340 350 360 bm0553 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE :::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::: gi|351 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYRKLKASCQESARIE 300 310 320 330 340 350 370 380 390 400 410 420 bm0553 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: gi|351 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRRPPEEPPDFCCPKCQYQAPDMDTLQIHV 360 370 380 390 400 410 bm0553 MECIE ::::: gi|351 MECIE >>gi|160213471|gb|ABX10999.1| inhibitor of kappa light p (419 aa) initn: 2716 init1: 2716 opt: 2716 Z-score: 2286.5 bits: 432.1 E(): 1e-118 Smith-Waterman score: 2716; 98.807% identity (100.000% similar) in 419 aa overlap (7-425:1-419) 10 20 30 40 50 60 bm0553 QPLPCWMNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC :.:::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 MSRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC 10 20 30 40 50 70 80 90 100 110 120 bm0553 LEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDL ::::::::::::::::.::::::::::::::::::::::::::::::::::::.:::::: gi|160 LEENQELRDAIRQSNQMLRERCEELLHFQASQREEKEFLMCKFQEARKLVERLSLEKLDL 60 70 80 90 100 110 130 140 150 160 170 180 bm0553 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA ::::::::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|160 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQTLEGRA 120 130 140 150 160 170 190 200 210 220 230 240 bm0553 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY 180 190 200 210 220 230 250 260 270 280 290 300 bm0553 HQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|160 HQLFQEYDNHIKSSLVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV 240 250 260 270 280 290 310 320 330 340 350 360 bm0553 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE 300 310 320 330 340 350 370 380 390 400 410 420 bm0553 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|160 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV 360 370 380 390 400 410 bm0553 MECIE ::::: gi|160 MECIE >>gi|167045831|gb|ABZ10499.1| inhibitor of kappa light p (419 aa) initn: 2634 init1: 2634 opt: 2634 Z-score: 2217.9 bits: 419.4 E(): 6.8e-115 Smith-Waterman score: 2634; 96.181% identity (98.568% similar) in 419 aa overlap (7-425:1-419) 10 20 30 40 50 60 bm0553 QPLPCWMNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC :.::::::::::::::::::::::::::::::::: :::::::::::::::::: gi|167 MSRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKQAMLHLPSEQGAPETLQRC 10 20 30 40 50 70 80 90 100 110 120 bm0553 LEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDL ::::::::::::::::.::::::::::::::::::::::::::::::::::::.:::::: gi|167 LEENQELRDAIRQSNQMLRERCEELLHFQASQREEKEFLMCKFQEARKLVERLSLEKLDL 60 70 80 90 100 110 130 140 150 160 170 180 bm0553 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA 120 130 140 150 160 170 190 200 210 220 230 240 bm0553 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 RAASEQVRQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY 180 190 200 210 220 230 250 260 270 280 290 300 bm0553 HQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV ::::::::::::::::.::::::::::::::::::::::::::::.::::::::::::.: gi|167 HQLFQEYDNHIKSSVVSSERKRGMQLEDLKQQLQQAEEALVAKQELIDKLKEEAEQHKMV 240 250 260 270 280 290 310 320 330 340 350 360 bm0553 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|167 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE 300 310 320 330 340 350 370 380 390 400 410 420 bm0553 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV :::::::::: .:::::::. : :: :.::::::::::::::::::::::::::::::: gi|167 DMRKRHVEVSPTPLPPAPAHHSFLLAQPNQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV 360 370 380 390 400 410 bm0553 MECIE ::::: gi|167 MECIE >>gi|170649646|gb|ACB21233.1| inhibitor of kappa light p (419 aa) initn: 2630 init1: 2630 opt: 2630 Z-score: 2214.5 bits: 418.8 E(): 1e-114 Smith-Waterman score: 2630; 95.704% identity (98.807% similar) in 419 aa overlap (7-425:1-419) 10 20 30 40 50 60 bm0553 QPLPCWMNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC :.::::::::::::::.:::::::::::::::.::::::::::::::::::::: gi|170 MSRHLWKSQLCEMVQPGGGPAADQDVLGEESPVGKPAMLHLPSEQGAPETLQRC 10 20 30 40 50 70 80 90 100 110 120 bm0553 LEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDL ::::::::::::::::.::::::::::::::::::::::::::::::::::::.:::::: gi|170 LEENQELRDAIRQSNQMLRERCEELLHFQASQREEKEFLMCKFQEARKLVERLSLEKLDL 60 70 80 90 100 110 130 140 150 160 170 180 bm0553 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 KRQKEQALREAEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA 120 130 140 150 160 170 190 200 210 220 230 240 bm0553 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY ::::::.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 RAASEQVRQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY 180 190 200 210 220 230 250 260 270 280 290 300 bm0553 HQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV ::::::::::::::::..:::::::::::::::::::::::::::::::::.::::::.: gi|170 HQLFQEYDNHIKSSVVSGERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKDEAEQHKMV 240 250 260 270 280 290 310 320 330 340 350 360 bm0553 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|170 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE 300 310 320 330 340 350 370 380 390 400 410 420 bm0553 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV :::::: ::::::::::::. : :: :.::::::::::::::::::::::::::::::: gi|170 DMRKRHGEVSQAPLPPAPAHHSFLLAQPNQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV 360 370 380 390 400 410 bm0553 MECIE ::::: gi|170 MECIE >>gi|161137769|gb|ABX57883.1| inhibitor of kappa light p (419 aa) initn: 2412 init1: 2412 opt: 2421 Z-score: 2039.5 bits: 386.4 E(): 5.8e-105 Smith-Waterman score: 2421; 89.021% identity (96.181% similar) in 419 aa overlap (7-425:1-419) 10 20 30 40 50 60 bm0553 QPLPCWMNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC :.: :::: :::::::::::.::::::::: ::::.:::::::::::::.::: gi|161 MSRTPWKSQPCEMVQPSGGPAGDQDVLGEESSLGKPTMLHLPSEQGAPETFQRC 10 20 30 40 50 70 80 90 100 110 120 bm0553 LEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDL ::::::::::::::::.:::::::: .::.:::::::::: :: :::.:::::.::::.: gi|161 LEENQELRDAIRQSNQMLRERCEELQRFQGSQREEKEFLMQKFCEARRLVERLSLEKLEL 60 70 80 90 100 110 130 140 150 160 170 180 bm0553 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA .::.::::.::: :: :::::::::::::::::::::::::::::::::::: ::::.:. gi|161 RRQREQALQEVELLKTCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKERQALESRV 120 130 140 150 160 170 190 200 210 220 230 240 bm0553 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY ::.:::.::::.:::::::::::::::::.:.::.::::::::::::::::::::::::: gi|161 RATSEQVRQLENEREALQQQHSVQVDQLRLQSQSMEAALRMERQAASEEKRKLAQLQVAY 180 190 200 210 220 230 250 260 270 280 290 300 bm0553 HQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV ::::::::::::::::.:::.::.:::::::::::::::::::::::::::::::::::: gi|161 HQLFQEYDNHIKSSVVSSERNRGLQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV 240 250 260 270 280 290 310 320 330 340 350 360 bm0553 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE ::::::::::::::::::::::::::.:::.::::::::::::::::.::.::::::::: gi|161 METVPVLKAQADIYKADFQAERQAREQLAERKELLQEQLEQLQREYSRLKTSCQESARIE 300 310 320 330 340 350 370 380 390 400 410 420 bm0553 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV ::::::::::: ::::::. : ::::::::::::::.:::::::::::::::::::: gi|161 DMRKRHVEVSQPTLPPAPAHHSFHPALPSQRRSPPEEPPNFCCPKCQYQAPDMDTLQIHV 360 370 380 390 400 410 bm0553 MECIE ::::: gi|161 MECIE >>gi|184185511|gb|ACC68914.1| inhibitor of kappa light p (419 aa) initn: 2419 init1: 2419 opt: 2419 Z-score: 2037.9 bits: 386.1 E(): 7.2e-105 Smith-Waterman score: 2419; 90.097% identity (96.618% similar) in 414 aa overlap (12-425:6-419) 10 20 30 40 50 60 bm0553 QPLPCWMNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC ::::::::::::::::.::::::::: ::::.:::::::::::::.::: gi|184 MSGPPWKSQLCEMVQPSGGPAGDQDVLGEESSLGKPTMLHLPSEQGAPETFQRC 10 20 30 40 50 70 80 90 100 110 120 bm0553 LEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDL ::::::::::::::::.::: :::: .::..::::::::: .:::::.:::::.:::.:: gi|184 LEENQELRDAIRQSNQMLRECCEELQRFQGNQREEKEFLMQRFQEARSLVERLSLEKVDL 60 70 80 90 100 110 130 140 150 160 170 180 bm0553 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA .::.::::.::::::::::::::::::::::::::::::::::::::::::: ::::.:: gi|184 RRQREQALQEVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKERQALESRA 120 130 140 150 160 170 190 200 210 220 230 240 bm0553 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY :.::::::::::::::::::::::::::::: ::.::::::::::::::::::::::::: gi|184 RVASEQARQLESEREALQQQHSVQVDQLRMQTQSMEAALRMERQAASEEKRKLAQLQVAY 180 190 200 210 220 230 250 260 270 280 290 300 bm0553 HQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV :::::.:::::::::..:::.::::::::::.:::::::::::::::::::::::::::: gi|184 HQLFQDYDNHIKSSVMSSERNRGMQLEDLKQRLQQAEEALVAKQEVIDKLKEEAEQHKIV 240 250 260 270 280 290 310 320 330 340 350 360 bm0553 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE :::: :::.::::::.::::::::::::::::::::::::::::.::.:::::::::::: gi|184 METVSVLKVQADIYKTDFQAERQAREKLAEKKELLQEQLEQLQRDYSRLKASCQESARIE 300 310 320 330 340 350 370 380 390 400 410 420 bm0553 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV ::::::::::: :: ::::. : ::: ::::: :::::::::::::::::::::::::: gi|184 DMRKRHVEVSQPPLAPAPAHHSFHLALSSQRRSTPEEPPDFCCPKCQYQAPDMDTLQIHV 360 370 380 390 400 410 bm0553 MECIE ::::: gi|184 MECIE >>gi|31321959|gb|AAM54725.1| inhibitor of kappaB kinase (430 aa) initn: 1586 init1: 1507 opt: 2409 Z-score: 2029.3 bits: 384.6 E(): 2.2e-104 Smith-Waterman score: 2409; 86.353% identity (94.353% similar) in 425 aa overlap (1-425:13-430) 10 20 30 40 bm0553 QPLPCWMNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLP : : ::::.: ::.:: :::::::::: :::.::::: :::::::::: gi|313 MYIRYCCDDQDTQTLSCWMNKHPWKNQLSEMVQPSGGPAEDQDMLGEESSLGKPAMLHLP 10 20 30 40 50 60 50 60 70 80 90 100 bm0553 SEQGAPETLQRCLEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARK ::::.:::::::::::::::::::::::.::::::::::::.:::::::::::::::::: gi|313 SEQGTPETLQRCLEENQELRDAIRQSNQMLRERCEELLHFQVSQREEKEFLMCKFQEARK 70 80 90 100 110 120 110 120 130 140 150 160 bm0553 LVERLGLEKLDLKRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEA :::::.::::::. :.::::.:.:.::.:::::::::::::::::::::::::::::::: gi|313 LVERLSLEKLDLRSQREQALKELEQLKKCQQQMAEDKASVKAQVTSLLGELQESQSRLEA 130 140 150 160 170 180 170 180 190 200 210 220 bm0553 ATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASE :::. :::::: ::.:::.::::::::.:::::::::::::::.:::::::::::::::: gi|313 ATKDRQALEGRIRAVSEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASE 190 200 210 220 230 240 230 240 250 260 270 280 bm0553 EKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVID :::::::::.:::::::.::.::::: .:::::::.:::::::::::::::.:: gi|313 EKRKLAQLQAAYHQLFQDYDSHIKSS-------KGMQLEDLRQQLQQAEEALVAKQELID 250 260 270 280 290 290 300 310 320 330 340 bm0553 KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSK ::::::::::::::::::::::::::::::::::.:::::.:::: :::::::::::..: gi|313 KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFNK 300 310 320 330 340 350 350 360 370 380 390 400 bm0553 LKASCQESARIEDMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQY ::..:.::::::::::::::. : :: ::::. : ::: .::::::::::::::::::: gi|313 LKVGCHESARIEDMRKRHVETPQPPLLPAPAHHSFHLALSNQRRSPPEEPPDFCCPKCQY 360 370 380 390 400 410 410 420 bm0553 QAPDMDTLQIHVMECIE ::::::::::::::::: gi|313 QAPDMDTLQIHVMECIE 420 430 >>gi|81864194|sp|Q6TMG5|NEMO_RAT NF-kappa-B essential mo (412 aa) initn: 1541 init1: 1485 opt: 2396 Z-score: 2018.7 bits: 382.5 E(): 8.4e-104 Smith-Waterman score: 2396; 87.351% identity (95.704% similar) in 419 aa overlap (7-425:1-412) 10 20 30 40 50 60 bm0553 QPLPCWMNRHLWKSQLCEMVQPSGGPAADQDVLGEESPLGKPAMLHLPSEQGAPETLQRC :.:::::.:: :::::::::: :::.::::: ::::::::::::::.::::::: gi|818 MSRHLWKNQLSEMVQPSGGPAEDQDMLGEESSLGKPAMLHLPSEQGTPETLQRC 10 20 30 40 50 70 80 90 100 110 120 bm0553 LEENQELRDAIRQSNQILRERCEELLHFQASQREEKEFLMCKFQEARKLVERLGLEKLDL ::::::::::::::::.::::::::::::.:::::::::::::::::::::::.:::::: gi|818 LEENQELRDAIRQSNQMLRERCEELLHFQVSQREEKEFLMCKFQEARKLVERLSLEKLDL 60 70 80 90 100 110 130 140 150 160 170 180 bm0553 KRQKEQALREVEHLKRCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKECQALEGRA .::.::::...::::.:::::::::::::::::::::::::::::::::::: :.:::: gi|818 RRQREQALEDLEHLKKCQQQMAEDKASVKAQVTSLLGELQESQSRLEAATKERQTLEGRI 120 130 140 150 160 170 190 200 210 220 230 240 bm0553 RAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAY ::.:::.::::::::.:::::::::::::::.:::::::::::::::::::::::::.:: gi|818 RAVSEQVRQLESEREVLQQQHSVQVDQLRMQNQSVEAALRMERQAASEEKRKLAQLQAAY 180 190 200 210 220 230 250 260 270 280 290 300 bm0553 HQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQLQQAEEALVAKQEVIDKLKEEAEQHKIV :::::.::.::::: .:::::::.:::::::::::::::.:::::::::::::: gi|818 HQLFQDYDSHIKSS-------KGMQLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIV 240 250 260 270 280 310 320 330 340 350 360 bm0553 METVPVLKAQADIYKADFQAERQAREKLAEKKELLQEQLEQLQREYSKLKASCQESARIE ::::::::::::::::::::::.:::::.:.::::::::::::::..:::..:.:::::: gi|818 METVPVLKAQADIYKADFQAERHAREKLVERKELLQEQLEQLQREFNKLKVGCHESARIE 290 300 310 320 330 340 370 380 390 400 410 420 bm0553 DMRKRHVEVSQAPLPPAPAYLSSPLALPSQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV ::::::::.:: :: ::::. : ::: .::::::::::::::::::::::::::::::: gi|818 DMRKRHVETSQPPLLPAPAHHSFHLALSNQRRSPPEEPPDFCCPKCQYQAPDMDTLQIHV 350 360 370 380 390 400 bm0553 MECIE ::::: gi|818 MECIE 410 425 residues in 1 query sequences 2355815254 residues in 6825066 library sequences Tcomplib [34.26] (8 proc) start: Fri Aug 8 00:12:25 2008 done: Fri Aug 8 00:14:56 2008 Total Scan time: 815.190 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]